Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.263396	4633401G24Rik	RIKEN cDNA 4633401G24 gene	8		70812
Mm.263396	Itgb1	integrin beta 1 (fibronectin receptor beta)	8		16412
Gene Ontology	cell adhesion | cell-matrix adhesion | extracellular space | G1/S transition of mitotic cell cycle | integral to membrane | integrin complex | integrin-mediated signaling pathway | metabolism | oxidoreductase activity | plasma membrane | protein binding | receptor activity | regulation of cell cycle | synaptosome
Human Homolog	ITGB1[integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 121 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CAGGTTTGGG (6) 17.9 0.0179 P8 Cb GC CTGTGTTTCA (6) 6.5 0.0065 P8 Cb GC CAGGAGCGGA (4) 4.9 0.0049 P8 Cb GC CCTCAAAAAA (12) 3.3 0.0033 P8 Cb GC ACTGAATTTC (3) 1.6 0.0016 P8 Cb GC CTTGCTCTGT (6) 1.6 0.0016 P8 Cb GC TGACTGTTCT (4) 1.6 0.0016 Cb medulloblastoma CTGTGTTTCA (6) 4.6 0.0046 Cb medulloblastoma ACTGATTTTC (6) 2.3 0.0023 Cb medulloblastoma CAGGAGCGGA (4) 2.3 0.0023 Cb medulloblastoma TCAGACCTGC (4) 2.3 0.0023 P8 GC+1d culture CAGGTTTGGG (6) 24 0.024 P8 GC+1d culture CTTGCTCTGT (6) 14.8 0.0148 P8 GC+1d culture TGACTGTTCT (4) 8 0.008 P8 GC+1d culture TGCAGGTGCA (2) 8 0.008 P8 GC+1d culture ACTGAATTTC (3) 2.3 0.0023 P8 GC+1d culture CTGTGTTTCA (6) 2.3 0.0023 P8 GC+1d culture ACTGATTTTC (6) 1.1 0.0011 P8 GC+1d culture CAGGAGCGGA (4) 1.1 0.0011 P8 GC+1d culture GTGGACAAGG (6) 1.1 0.0011 P8 GC+SHH+1d culture CAGGTTTGGG (6) 36.3 0.0363 P8 GC+SHH+1d culture TGACTGTTCT (4) 9.4 0.0094 P8 GC+SHH+1d culture TGCAGGTGCA (2) 8.2 0.0082 P8 GC+SHH+1d culture CTTGCTCTGT (6) 7 0.007 P8 GC+SHH+1d culture CAGGAGCGGA (4) 5.9 0.0059 P8 GC+SHH+1d culture ACTGATTTTC (6) 2.3 0.0023 P8 GC+SHH+1d culture CCTCAAAAAA (12) 2.3 0.0023 P8 GC+SHH+1d culture CTGTGTTTCA (6) 2.3 0.0023 P8 GC+SHH+1d culture GTGGACAAGG (6) 1.2 0.0012 3T3 fibroblasts CTTGCTCTGT (6) 38.6 0.0386 3T3 fibroblasts CAGGAGCGGA (4) 31.5 0.0315 3T3 fibroblasts TGCAGGTGCA (2) 24.5 0.0245 3T3 fibroblasts CAGGTTTGGG (6) 21 0.021 E15 cortex CAGGAGCGGA (4) 19.8 0.0198 E15 cortex CAGGTTTGGG (6) 19.8 0.0198 E15 cortex AGCAAATCAA (4) 4.9 0.0049 E15 cortex CTTGCTCTGT (6) 4.9 0.0049 E15 cortex GTGGACAAGG (6) 4.9 0.0049 P1 cortex CAGGAGCGGA (4) 13.6 0.0136 P1 cortex CAGGTTTGGG (6) 4.5 0.0045 Hypothalamus CTGTGTTTCA (6) 7.2 0.0072 Hypothalamus CAGGAGCGGA (4) 5.4 0.0054 Hypothalamus ACTGAATTTC (3) 1.8 0.0018 Hypothalamus TGCAGGTGCA (2) 1.8 0.0018 E12.5 retina CAGGTTTGGG (6) 30 0.03 E12.5 retina CTTGCTCTGT (6) 9.4 0.0094 E12.5 retina CCTCAAAAAA (12) 5.6 0.0056 E12.5 retina ACTGATTTTC (6) 3.8 0.0038 E12.5 retina CAGGAGCGGA (4) 3.8 0.0038 E12.5 retina GATTATAACA (2) 1.9 0.0019 E12.5 retina TGCAGGTGCA (2) 1.9 0.0019 E14.5 retina CAGGTTTGGG (6) 27.3 0.0273 E14.5 retina CTTGCTCTGT (6) 7.3 0.0073 E14.5 retina ACTGAATTTC (3) 5.5 0.0055 E14.5 retina CAGGAGCGGA (4) 5.5 0.0055 E14.5 retina CTGTGTTTCA (6) 5.5 0.0055 E14.5 retina GCATTCCAGC (4) 5.5 0.0055 E16.5 retina CAGGTTTGGG (6) 30.8 0.0308 E16.5 retina CAGGAGCGGA (4) 7.2 0.0072 E16.5 retina ACTGAATTTC (3) 5.4 0.0054 E16.5 retina CTGTGTTTCA (6) 5.4 0.0054 E16.5 retina CTTGCTCTGT (6) 5.4 0.0054 E16.5 retina CCTCAAAAAA (12) 1.8 0.0018 E16.5 retina TGCAGGTGCA (2) 1.8 0.0018 E18.5 retina CAGGTTTGGG (6) 23.6 0.0236 E18.5 retina CTGTGTTTCA (6) 9.1 0.0091 E18.5 retina CAGGAGCGGA (4) 7.3 0.0073 E18.5 retina CTTGCTCTGT (6) 5.5 0.0055 E18.5 retina ACTGAATTTC (3) 3.6 0.0036 E18.5 retina GAAAAATTCT (5) 1.8 0.0018 E18.5 retina TGCAGGTGCA (2) 1.8 0.0018 P0.5 retina CAGGTTTGGG (6) 29.4 0.0294 P0.5 retina CAGGAGCGGA (4) 11.8 0.0118 P0.5 retina AGCAAATCAA (4) 3.9 0.0039 P0.5 retina CTGTGTTTCA (6) 3.9 0.0039 P0.5 retina ACTGAATTTC (3) 2 0.002 P0.5 retina ACTGATTTTC (6) 2 0.002 P0.5 retina TGCAGGTGCA (2) 2 0.002 P2.5 retina CAGGTTTGGG (6) 14.1 0.0141 P2.5 retina TGCAGGTGCA (2) 5.3 0.0053 P2.5 retina CAGGAGCGGA (4) 3.5 0.0035 P2.5 retina CCTCAAAAAA (12) 3.5 0.0035 P2.5 retina CTGTGTTTCA (6) 3.5 0.0035 P2.5 retina CTTGCTCTGT (6) 3.5 0.0035 P2.5 retina AGCAAATCAA (4) 1.8 0.0018 P4.5 retina CAGGTTTGGG (6) 19.8 0.0198 P4.5 retina CTGTGTTTCA (6) 5.9 0.0059 P4.5 retina ACTGATTTTC (6) 4 0.004 P4.5 retina CAGGAGCGGA (4) 2 0.002 P4.5 retina CCTCAAAAAA (12) 2 0.002 P4.5 retina CTTGCTCTGT (6) 2 0.002 P4.5 retina TGCAGGTGCA (2) 2 0.002 P6.5 retina CTGTGTTTCA (6) 8.3 0.0083 P6.5 retina CAGGAGCGGA (4) 6.7 0.0067 P6.5 retina CAGGTTTGGG (6) 5 0.005 P6.5 retina CTTGCTCTGT (6) 5 0.005 P6.5 retina ACTGAATTTC (3) 3.3 0.0033 P6.5 retina TGCAGGTGCA (2) 3.3 0.0033 P6.5 retina CCTCAAAAAA (12) 1.7 0.0017 P6.5 retina GATTATAACA (2) 1.7 0.0017 P10.5 crx- retina CAGGAGCGGA (4) 13 0.013 P10.5 crx- retina ACTGATTTTC (6) 1.9 0.0019 P10.5 crx- retina CAGGTTTGGG (6) 1.9 0.0019 P10.5 crx- retina CTGTGTTTCA (6) 1.9 0.0019 P10.5 crx- retina CTTGCTCTGT (6) 1.9 0.0019 P10.5 crx+ retina CAGGTTTGGG (6) 17.3 0.0173 P10.5 crx+ retina CTTGCTCTGT (6) 5.8 0.0058 P10.5 crx+ retina CAGGAGCGGA (4) 1.9 0.0019 P10.5 crx+ retina CCTCAAAAAA (12) 1.9 0.0019 P10.5 crx+ retina CTGTGTTTCA (6) 1.9 0.0019 Adult retinal CAGGAGCGGA (4) 7.4 0.0074 Adult retinal CAGGTTTGGG (6) 3.7 0.0037 Adult retinal CTGTGTTTCA (6) 3.7 0.0037 Adult retinal CTTGCTCTGT (6) 1.9 0.0019 Adult retinal TGCAGGTGCA (2) 1.9 0.0019 ONL CTGTGTTTCA (6) 3.8 0.0038 ONL GAAAAATTCT (5) 3.8 0.0038 ONL AGCAAATCAA (4) 1.9 0.0019 ONL CAGGAGCGGA (4) 1.9 0.0019 ONL CCTCAAAAAA (12) 1.9 0.0019 ONL TGCAGGTGCA (2) 1.9 0.0019