Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.2647	Pfn1	profilin 1	11	11 42.0 cM	18643
Gene Ontology	actin binding | actin cytoskeleton | actin cytoskeleton organization and biogenesis | cytoplasm | cytoskeleton | cytoskeleton organization and biogenesis | protein binding | regulation of actin polymerization and/or depolymerization | sequestering of actin monomers
Human Homolog	PFN1[profilin 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 94 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGCTGGGGGC (5) 37.5 0.0375 P8 Cb GC TTATGAAATG (2) 37.5 0.0375 P8 Cb GC ACTGCCAAGA (2) 3.3 0.0033 P8 Cb GC GGGCTTGGGG (3) 1.6 0.0016 Cb medulloblastoma TTATGAAATG (2) 39.3 0.0393 Cb medulloblastoma GGCTGGGGGC (5) 30.1 0.0301 Cb medulloblastoma CACTGCCCAC (7) 2.3 0.0023 Cb medulloblastoma GTGACAGTGA (5) 2.3 0.0023 P8 GC+1d culture GGCTGGGGGC (5) 35.4 0.0354 P8 GC+1d culture TTATGAAATG (2) 34.2 0.0342 P8 GC+1d culture GACAGACACT (5) 2.3 0.0023 P8 GC+1d culture GCCGTGTGGA 1.1 0.0011 P8 GC+1d culture GGCCTTGGGG (6) 1.1 0.0011 P8 GC+SHH+1d culture GGCTGGGGGC (5) 46.8 0.0468 P8 GC+SHH+1d culture TTATGAAATG (2) 35.1 0.0351 P8 GC+SHH+1d culture GACAGACACT (5) 1.2 0.0012 P8 GC+SHH+1d culture GCCGTGTGGA 1.2 0.0012 P8 GC+SHH+1d culture GGCCTTGGGG (6) 1.2 0.0012 P8 GC+SHH+1d culture GTGACAGTGA (5) 1.2 0.0012 P8 GC+SHH+1d culture TTTGAAATGG (4) 1.2 0.0012 3T3 fibroblasts GGCTGGGGGC (5) 178.8 0.1788 3T3 fibroblasts ACTGCCAAGA (2) 10.5 0.0105 3T3 fibroblasts GTGACAGTGA (5) 7 0.007 3T3 fibroblasts GCCGGGTGGA (2) 3.5 0.0035 3T3 fibroblasts GCTGGGGGCT (5) 3.5 0.0035 3T3 fibroblasts GGCCTTGGGG (6) 3.5 0.0035 3T3 fibroblasts TTATGAAATG (2) 3.5 0.0035 E15 cortex GGCTGGGGGC (5) 118.7 0.1187 E15 cortex GGCCTTGGGG (6) 14.8 0.0148 E15 cortex TTATGAAATG (2) 9.9 0.0099 E15 cortex ACTGCCAAGA (2) 4.9 0.0049 E15 cortex GCCGGGTGGA (2) 4.9 0.0049 E15 cortex GCCGTGTGGA 4.9 0.0049 P1 cortex GGCTGGGGGC (5) 31.8 0.0318 P1 cortex TTATGAAATG (2) 27.3 0.0273 P1 cortex ACTGCCAAGA (2) 4.5 0.0045 Hypothalamus TTATGAAATG (2) 70.6 0.0706 Hypothalamus GTGACAGTGA (5) 10.9 0.0109 Hypothalamus ACTGCCAAGA (2) 1.8 0.0018 Hypothalamus GACAGACACT (5) 1.8 0.0018 Hypothalamus GCTGGGGGCT (5) 1.8 0.0018 Hypothalamus GGCTGGGGGC (5) 1.8 0.0018 Hypothalamus GGGCTTGGGG (3) 1.8 0.0018 Hypothalamus TTTGAAATGG (4) 1.8 0.0018 E12.5 retina GGCTGGGGGC (5) 56.3 0.0563 E12.5 retina TTATGAAATG (2) 30 0.03 E12.5 retina TTTGAAATGG (4) 3.8 0.0038 E14.5 retina TTATGAAATG (2) 34.6 0.0346 E14.5 retina GGCCTTGGGG (6) 5.5 0.0055 E14.5 retina GTGACAGTGA (5) 3.6 0.0036 E16.5 retina TTATGAAATG (2) 47.1 0.0471 E16.5 retina GGCTGGGGGC (5) 12.7 0.0127 E16.5 retina GGCCTTGGGG (6) 3.6 0.0036 E16.5 retina GTGACAGTGA (5) 3.6 0.0036 E16.5 retina GACAGACACT (5) 1.8 0.0018 E16.5 retina GCCGGGTGGA (2) 1.8 0.0018 E16.5 retina GGGCTTGGGG (3) 1.8 0.0018 E18.5 retina TTATGAAATG (2) 85.5 0.0855 E18.5 retina GGCTGGGGGC (5) 38.2 0.0382 P0.5 retina GGCTGGGGGC (5) 33.4 0.0334 P0.5 retina TTATGAAATG (2) 21.6 0.0216 P0.5 retina GGCCTTGGGG (6) 3.9 0.0039 P2.5 retina GGCTGGGGGC (5) 51 0.051 P2.5 retina TTATGAAATG (2) 35.2 0.0352 P2.5 retina GGCCTTGGGG (6) 7 0.007 P2.5 retina CACTGCCCAC (7) 1.8 0.0018 P2.5 retina GGCCTGGGGG (7) 1.8 0.0018 P2.5 retina GTGACAGTGA (5) 1.8 0.0018 P4.5 retina TTATGAAATG (2) 37.6 0.0376 P4.5 retina GGCTGGGGGC (5) 27.7 0.0277 P4.5 retina GGCCTTGGGG (6) 2 0.002 P6.5 retina TTATGAAATG (2) 56.7 0.0567 P6.5 retina GGCTGGGGGC (5) 25 0.025 P6.5 retina GGCTGGGGCT (3) 5 0.005 P6.5 retina GACAGACACT (5) 1.7 0.0017 P6.5 retina GGCCTGGGGG (7) 1.7 0.0017 P6.5 retina GGCCTTGGGG (6) 1.7 0.0017 P10.5 crx- retina TTATGAAATG (2) 46.4 0.0464 P10.5 crx- retina GACAGACACT (5) 7.4 0.0074 P10.5 crx- retina GGCTGGGGGC (5) 1.9 0.0019 P10.5 crx- retina GGGCTTGGGG (3) 1.9 0.0019 P10.5 crx+ retina GGCTGGGGGC (5) 38.4 0.0384 P10.5 crx+ retina TTATGAAATG (2) 36.5 0.0365 P10.5 crx+ retina GACAGACACT (5) 3.8 0.0038 Adult retinal TTATGAAATG (2) 22.2 0.0222 Adult retinal GGCTGGGGGC (5) 16.7 0.0167 Adult retinal GGCTGGGGCT (3) 3.7 0.0037 Adult retinal GACAGACACT (5) 1.9 0.0019 Adult retinal GGCCTGGGGG (7) 1.9 0.0019 ONL TTATGAAATG (2) 19.2 0.0192 ONL GGCTGGGGGC (5) 3.8 0.0038 ONL CACTGCCCAC (7) 1.9 0.0019 ONL GACAGACACT (5) 1.9 0.0019 ONL TTTGAAATGG (4) 1.9 0.0019