Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.265610	E130317F20Rik	RIKEN cDNA E130317F20 gene			414101
Mm.265610	Ptbp1	polypyrimidine tract binding protein 1	10	10 43.0 cM	19205
Gene Ontology	mRNA processing | nuclear mRNA splicing, via spliceosome | nucleus | RNA binding
Human Homolog	PTBP1[polypyrimidine tract binding protein 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 108 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GATGGCATCG (4) 13.1 0.0131 P8 Cb GC AACAGCTCTG (7) 6.5 0.0065 P8 Cb GC AGAACAAAAC (5) 3.3 0.0033 P8 Cb GC GGAAAATATG (5) 1.6 0.0016 P8 Cb GC GTGCTGGGAT (6) 1.6 0.0016 Cb medulloblastoma CTCAGTATTG (5) 4.6 0.0046 Cb medulloblastoma CCAAGGCTGT (3) 2.3 0.0023 Cb medulloblastoma CCCAGGCTTG (3) 2.3 0.0023 Cb medulloblastoma GATGGCATCG (4) 2.3 0.0023 Cb medulloblastoma GCCAAGCTGG (2) 2.3 0.0023 Cb medulloblastoma GCCGTACACC (2) 2.3 0.0023 P8 GC+1d culture AACAGCTCTG (7) 16 0.016 P8 GC+1d culture GATGGCATCG (4) 8 0.008 P8 GC+1d culture CCCAGGCTTG (3) 6.8 0.0068 P8 GC+1d culture ACCTGGGCGA (2) 1.1 0.0011 P8 GC+1d culture AGCCACCATT (2) 1.1 0.0011 P8 GC+1d culture CTCAGTATTG (5) 1.1 0.0011 P8 GC+1d culture GCAGGCAAAC (3) 1.1 0.0011 P8 GC+1d culture TCCCTGGCCA (2) 1.1 0.0011 P8 GC+SHH+1d culture AACAGCTCTG (7) 8.2 0.0082 P8 GC+SHH+1d culture GATGGCATCG (4) 7 0.007 P8 GC+SHH+1d culture GGAAAATATG (5) 4.7 0.0047 P8 GC+SHH+1d culture CCCAGGCTTG (3) 2.3 0.0023 P8 GC+SHH+1d culture GTGCTGGGAT (6) 2.3 0.0023 P8 GC+SHH+1d culture TCCCTGGCCA (2) 2.3 0.0023 3T3 fibroblasts TCCCTGGCCA (2) 31.5 0.0315 3T3 fibroblasts GATGGCATCG (4) 17.5 0.0175 3T3 fibroblasts ACCTGGGCGA (2) 3.5 0.0035 E15 cortex GATGGCATCG (4) 9.9 0.0099 E15 cortex AGAACAAAAC (5) 4.9 0.0049 E15 cortex AGCCACCATT (2) 4.9 0.0049 E15 cortex CCCAGGCTTG (3) 4.9 0.0049 E15 cortex GCAGGCAAAC (3) 4.9 0.0049 E15 cortex GCCAAGCTGG (2) 4.9 0.0049 E15 cortex TCCCTGGCCA (2) 4.9 0.0049 P1 cortex GATGGCATCG (4) 9.1 0.0091 P1 cortex AACAGCTCTG (7) 4.5 0.0045 P1 cortex CCAAGCTGTC (3) 4.5 0.0045 P1 cortex TAAGAAAGCT (3) 4.5 0.0045 Hypothalamus CTCAGTATTG (5) 5.4 0.0054 Hypothalamus GATGGCATCG (4) 3.6 0.0036 Hypothalamus GCCAGCTGGG (4) 1.8 0.0018 Hypothalamus GGAAAATATG (5) 1.8 0.0018 E12.5 retina CCCAGGCTTG (3) 3.8 0.0038 E12.5 retina GATGGCATCG (4) 3.8 0.0038 E12.5 retina GGAAAATATG (5) 3.8 0.0038 E12.5 retina AACAGCTCTG (7) 1.9 0.0019 E12.5 retina ACCTGGGCGA (2) 1.9 0.0019 E12.5 retina GTGCTGGGAT (6) 1.9 0.0019 E12.5 retina GTTGTGCAGT (4) 1.9 0.0019 E12.5 retina TCCCTGGCCA (2) 1.9 0.0019 E14.5 retina AACAGCTCTG (7) 5.5 0.0055 E14.5 retina GATGGCATCG (4) 3.6 0.0036 E14.5 retina GCCGTACACC (2) 1.8 0.0018 E14.5 retina GGAAAATATG (5) 1.8 0.0018 E16.5 retina CCCAGGCTTG (3) 3.6 0.0036 E16.5 retina GGAAAATATG (5) 3.6 0.0036 E16.5 retina ATTACGCCAA (233) 1.8 0.0018 E16.5 retina GATGGCATCG (4) 1.8 0.0018 E16.5 retina GTTGTGCAGT (4) 1.8 0.0018 E18.5 retina TCCCTGGCCA (2) 5.5 0.0055 E18.5 retina CCAAGCTGTC (3) 3.6 0.0036 E18.5 retina CCCAGGCTTG (3) 3.6 0.0036 E18.5 retina GGAAAATATG (5) 3.6 0.0036 E18.5 retina GCCAGCTGGG (4) 1.8 0.0018 E18.5 retina GTGCTGGGAT (6) 1.8 0.0018 P0.5 retina GATGGCATCG (4) 19.6 0.0196 P0.5 retina CCCAGGCTTG (3) 7.9 0.0079 P0.5 retina AACAGCTCTG (7) 3.9 0.0039 P0.5 retina ACCTGGGCGA (2) 2 0.002 P0.5 retina ATTACGCCAA (233) 2 0.002 P0.5 retina GCCGTACACC (2) 2 0.002 P0.5 retina GTGCTGGGAT (6) 2 0.002 P0.5 retina TCCCTGGCCA (2) 2 0.002 P2.5 retina CCCAGGCTTG (3) 10.6 0.0106 P2.5 retina GATGGCATCG (4) 7 0.007 P2.5 retina TCCCTGGCCA (2) 5.3 0.0053 P2.5 retina GGAAAATATG (5) 3.5 0.0035 P2.5 retina AACAGCTCTG (7) 1.8 0.0018 P2.5 retina AGCCACCATT (2) 1.8 0.0018 P2.5 retina CCAAGGCTGT (3) 1.8 0.0018 P2.5 retina GTGCTGGGAT (6) 1.8 0.0018 P2.5 retina GTTGTGCAGT (4) 1.8 0.0018 P4.5 retina CCCAGGCTTG (3) 9.9 0.0099 P4.5 retina GGAAAATATG (5) 5.9 0.0059 P6.5 retina CCCAGGCTTG (3) 11.7 0.0117 P6.5 retina GGAAAATATG (5) 3.3 0.0033 P6.5 retina CTCAGTATTG (5) 1.7 0.0017 P10.5 crx- retina CCCAGGCTTG (3) 5.6 0.0056 P10.5 crx- retina GATGGCATCG (4) 3.7 0.0037 P10.5 crx- retina GGAAAATATG (5) 3.7 0.0037 P10.5 crx- retina CCAAGGCTGT (3) 1.9 0.0019 P10.5 crx- retina GCCAAGCTGG (2) 1.9 0.0019 P10.5 crx- retina TAAGAAAGCT (3) 1.9 0.0019 P10.5 crx- retina TCCCTGGCCA (2) 1.9 0.0019 P10.5 crx+ retina CCCAGGCTTG (3) 11.5 0.0115 P10.5 crx+ retina GGAAAATATG (5) 5.8 0.0058 P10.5 crx+ retina AACAGCTCTG (7) 1.9 0.0019 P10.5 crx+ retina GCAGGCAAAC (3) 1.9 0.0019 P10.5 crx+ retina GCCAGCTGGG (4) 1.9 0.0019 Adult retinal GATGGCATCG (4) 7.4 0.0074 Adult retinal AACAGCTCTG (7) 3.7 0.0037 Adult retinal ATTACGCCAA (233) 3.7 0.0037 Adult retinal CCCAGGCTTG (3) 3.7 0.0037 ONL CCCAGGCTTG (3) 1.9 0.0019 ONL GCCAGCTGGG (4) 1.9 0.0019 ONL TAAGAAAGCT (3) 1.9 0.0019 ONL TCCCTGGCCA (2) 1.9 0.0019