Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.26587	Nr1d2	nuclear receptor subfamily 1, group D, member 2	14		353187
Gene Ontology	DNA binding | ligand-dependent nuclear receptor activity | nucleus | receptor activity | regulation of transcription, DNA-dependent | steroid hormone receptor activity | thyroid hormone receptor activity | transcription factor activity
Human Homolog	NR1D2[nuclear receptor subfamily 1, group D, member 2]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 47 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CTGGGAAAGC (3) 8.2 0.0082 Cb medulloblastoma CTGGGAAAGC (3) 6.9 0.0069 Cb medulloblastoma TTATAAAGAC (2) 4.6 0.0046 Cb medulloblastoma GTATTTGGGG (3) 2.3 0.0023 Cb medulloblastoma TTAACCCTGA 2.3 0.0023 P8 GC+1d culture CTGGGAAAGC (3) 8 0.008 P8 GC+1d culture TTAACCCTGA 1.1 0.0011 P8 GC+SHH+1d culture CTGGGAAAGC (3) 16.4 0.0164 P8 GC+SHH+1d culture TTAACCCTGA 1.2 0.0012 3T3 fibroblasts CTGGGAAAGC (3) 3.5 0.0035 3T3 fibroblasts TTAACCCTGA 3.5 0.0035 E15 cortex CTGGGAAAGC (3) 4.9 0.0049 P1 cortex CTGGGAAAGC (3) 9.1 0.0091 Hypothalamus CTGGGAAAGC (3) 7.2 0.0072 Hypothalamus TTAACCCTGA 3.6 0.0036 Hypothalamus GTATTTGGGG (3) 1.8 0.0018 Hypothalamus TAGATTTGCA 1.8 0.0018 E12.5 retina CTGGGAAAGC (3) 22.5 0.0225 E12.5 retina GTCTAACAGT (3) 1.9 0.0019 E14.5 retina CTGGGAAAGC (3) 20 0.02 E14.5 retina TTATAAAGAC (2) 1.8 0.0018 E16.5 retina CTGGGAAAGC (3) 19.9 0.0199 E16.5 retina TAGATTTGCA 1.8 0.0018 E18.5 retina CTGGGAAAGC (3) 25.5 0.0255 E18.5 retina TTAACCCTGA 1.8 0.0018 P0.5 retina CTGGGAAAGC (3) 9.8 0.0098 P0.5 retina GTATTTGGGG (3) 2 0.002 P0.5 retina TAGATTTGCA 2 0.002 P2.5 retina CTGGGAAAGC (3) 7 0.007 P2.5 retina TAGATTTGCA 3.5 0.0035 P4.5 retina CTGGGAAAGC (3) 19.8 0.0198 P4.5 retina TAGATTTGCA 4 0.004 P4.5 retina GTCTAACAGT (3) 2 0.002 P4.5 retina TTATAAAGAC (2) 2 0.002 P6.5 retina CTGGGAAAGC (3) 13.3 0.0133 P6.5 retina TTAACCCTGA 3.3 0.0033 P10.5 crx- retina CTGGGAAAGC (3) 7.4 0.0074 P10.5 crx- retina TTAACCCTGA 7.4 0.0074 P10.5 crx- retina GTCTAACAGT (3) 1.9 0.0019 P10.5 crx+ retina CTGGGAAAGC (3) 7.7 0.0077 P10.5 crx+ retina TTAACCCTGA 1.9 0.0019 Adult retinal TTAACCCTGA 5.6 0.0056 Adult retinal CTGGGAAAGC (3) 3.7 0.0037 Adult retinal GTATTTGGGG (3) 3.7 0.0037 ONL CTGGGAAAGC (3) 5.7 0.0057 ONL TTAACCCTGA 5.7 0.0057 ONL TTATAAAGAC (2) 1.9 0.0019