Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.265917	Thra	thyroid hormone receptor alpha	11	11 57.0 cM	21833
Gene Ontology	cartilage condensation | cell growth and/or maintenance | DNA binding | ligand-dependent nuclear receptor activity | negative regulation of transcription | nucleus | organogenesis | ossification | physiological process | receptor activity | regulation of cell cycle | regulation of heart rate | regulation of transcription, DNA-dependent | steroid hormone receptor activity | thyroid hormone receptor activity | transcription factor activity | transcriptional repressor activity
Human Homolog	THRA[thyroid hormone receptor, alpha (erythroblastic leukemia viral (v-erb-a) oncogene homolog, avian)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 101 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TCTGTAGCCC (2) 29.4 0.0294 P8 Cb GC CCCACTGCCT (3) 6.5 0.0065 P8 Cb GC AACCAAGTAA (2) 1.6 0.0016 P8 Cb GC GACTTGGGTC (2) 1.6 0.0016 P8 Cb GC GTGGCCCACA (5) 1.6 0.0016 P8 Cb GC TCAGGTGAGC (2) 1.6 0.0016 Cb medulloblastoma TCTGTAGCCC (2) 62.4 0.0624 Cb medulloblastoma CCCACTGCCT (3) 20.8 0.0208 Cb medulloblastoma AACCAAGTAA (2) 2.3 0.0023 Cb medulloblastoma GTGGCCCACA (5) 2.3 0.0023 Cb medulloblastoma GTGTGAAAGG (4) 2.3 0.0023 P8 GC+1d culture TCTGTAGCCC (2) 41.1 0.0411 P8 GC+1d culture GTGGCCCACA (5) 5.7 0.0057 P8 GC+1d culture AGTCTGTTTC (2) 1.1 0.0011 P8 GC+1d culture CATTCCGAGA (2) 1.1 0.0011 P8 GC+1d culture CCATCTTGAC 1.1 0.0011 P8 GC+1d culture GAGATAATGT (2) 1.1 0.0011 P8 GC+SHH+1d culture TCTGTAGCCC (2) 31.6 0.0316 P8 GC+SHH+1d culture GTGGCCCACA (5) 9.4 0.0094 P8 GC+SHH+1d culture AGTCTGTTTC (2) 2.3 0.0023 P8 GC+SHH+1d culture CCCACTGCCT (3) 1.2 0.0012 P8 GC+SHH+1d culture GACTTGGGTC (2) 1.2 0.0012 3T3 fibroblasts GTGGCCCACA (5) 21 0.021 3T3 fibroblasts GACTTGGGTC (2) 7 0.007 3T3 fibroblasts TCTGTAGCCC (2) 7 0.007 3T3 fibroblasts GTGTGAAAGG (4) 3.5 0.0035 E15 cortex TCTGTAGCCC (2) 59.4 0.0594 E15 cortex GTGGCCCACA (5) 14.8 0.0148 E15 cortex GTGTGAAAGG (4) 9.9 0.0099 P1 cortex TCTGTAGCCC (2) 104.5 0.1045 P1 cortex AGTCTGTTTC (2) 4.5 0.0045 P1 cortex CCATCTTGAC 4.5 0.0045 P1 cortex GTGTGAAAGG (4) 4.5 0.0045 Hypothalamus TCTGTAGCCC (2) 47.1 0.0471 Hypothalamus CCCACTGCCT (3) 19.9 0.0199 Hypothalamus GTGGCCCACA (5) 9.1 0.0091 Hypothalamus AGTCTGTTTC (2) 1.8 0.0018 Hypothalamus CATTCCGAGA (2) 1.8 0.0018 E12.5 retina TCTGTAGCCC (2) 13.1 0.0131 E12.5 retina GTGGCCCACA (5) 5.6 0.0056 E12.5 retina CCCACTGCCT (3) 3.8 0.0038 E12.5 retina GAGATAATGT (2) 1.9 0.0019 E14.5 retina TCTGTAGCCC (2) 23.7 0.0237 E14.5 retina GTGGCCCACA (5) 9.1 0.0091 E14.5 retina CCCACTGCCT (3) 7.3 0.0073 E14.5 retina TCAGGTGAGC (2) 3.6 0.0036 E16.5 retina TCTGTAGCCC (2) 56.1 0.0561 E16.5 retina CCCACTGCCT (3) 21.7 0.0217 E16.5 retina GTGGCCCACA (5) 10.9 0.0109 E16.5 retina AACCAAGTAA (2) 5.4 0.0054 E16.5 retina CCATCTTGAC 3.6 0.0036 E16.5 retina AGTCTGTTTC (2) 1.8 0.0018 E16.5 retina TCAGGTGAGC (2) 1.8 0.0018 E18.5 retina TCTGTAGCCC (2) 40 0.04 E18.5 retina GTGGCCCACA (5) 10.9 0.0109 E18.5 retina CCCACTGCCT (3) 5.5 0.0055 E18.5 retina GTGTGAAAGG (4) 5.5 0.0055 E18.5 retina AGTCTGTTTC (2) 1.8 0.0018 P0.5 retina TCTGTAGCCC (2) 47.1 0.0471 P0.5 retina CCCACTGCCT (3) 5.9 0.0059 P0.5 retina GTGGCCCACA (5) 5.9 0.0059 P0.5 retina AGTCTGTTTC (2) 2 0.002 P0.5 retina CCATCTTGAC 2 0.002 P2.5 retina TCTGTAGCCC (2) 54.6 0.0546 P2.5 retina CCCACTGCCT (3) 7 0.007 P2.5 retina CATTCCGAGA (2) 1.8 0.0018 P2.5 retina GGAACTTTGG (6) 1.8 0.0018 P2.5 retina GTGGCCCACA (5) 1.8 0.0018 P4.5 retina TCTGTAGCCC (2) 55.5 0.0555 P4.5 retina GTGGCCCACA (5) 7.9 0.0079 P4.5 retina AGTCTGTTTC (2) 5.9 0.0059 P4.5 retina CCCACTGCCT (3) 4 0.004 P6.5 retina TCTGTAGCCC (2) 85 0.085 P6.5 retina CCCACTGCCT (3) 8.3 0.0083 P6.5 retina GTGGCCCACA (5) 6.7 0.0067 P6.5 retina AACCAAGTAA (2) 3.3 0.0033 P6.5 retina AGTCTGTTTC (2) 3.3 0.0033 P6.5 retina CATTCCGAGA (2) 3.3 0.0033 P6.5 retina GTGTGAAAGG (4) 3.3 0.0033 P10.5 crx- retina TCTGTAGCCC (2) 94.7 0.0947 P10.5 crx- retina CCCACTGCCT (3) 11.1 0.0111 P10.5 crx- retina GTGGCCCACA (5) 9.3 0.0093 P10.5 crx- retina AACCAAGTAA (2) 3.7 0.0037 P10.5 crx- retina CATTCCGAGA (2) 3.7 0.0037 P10.5 crx+ retina TCTGTAGCCC (2) 63.4 0.0634 P10.5 crx+ retina CCCACTGCCT (3) 13.5 0.0135 P10.5 crx+ retina GTGGCCCACA (5) 13.5 0.0135 P10.5 crx+ retina GTGTGAAAGG (4) 5.8 0.0058 Adult retinal TCTGTAGCCC (2) 27.8 0.0278 Adult retinal CCCACTGCCT (3) 5.6 0.0056 Adult retinal GTGGCCCACA (5) 5.6 0.0056 Adult retinal CATTCCGAGA (2) 1.9 0.0019 Adult retinal CCATCTTGAC 1.9 0.0019 Adult retinal GACTTGGGTC (2) 1.9 0.0019 ONL TCTGTAGCCC (2) 11.5 0.0115 ONL GGAACTTTGG (6) 5.7 0.0057 ONL GTGGCCCACA (5) 5.7 0.0057 ONL AGTCTGTTTC (2) 1.9 0.0019 ONL CCCACTGCCT (3) 1.9 0.0019 ONL GACTTGGGTC (2) 1.9 0.0019 ONL GAGATAATGT (2) 1.9 0.0019