Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.268000	Vim	vimentin	2	2 7.0 cM	22352
Gene Ontology	intermediate filament | intermediate filament-based process | structural molecule activity | type III intermediate filament
Human Homolog	VIM[vimentin]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 120 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGCAGCCCCC (5) 21.2 0.0212 P8 Cb GC AGGCCACAGC (3) 6.5 0.0065 P8 Cb GC AAGGAAGAGA (6) 3.3 0.0033 P8 Cb GC TGTACCAGGT (2) 3.3 0.0033 P8 Cb GC ACAGCCGTGG (5) 1.6 0.0016 P8 Cb GC AGAATTTGGT (6) 1.6 0.0016 P8 Cb GC TTTTGGATCT 1.6 0.0016 Cb medulloblastoma AGGCCACAGC (3) 9.2 0.0092 Cb medulloblastoma AGAATTTGGT (6) 6.9 0.0069 Cb medulloblastoma GGCAGCCCCC (5) 6.9 0.0069 Cb medulloblastoma TAGCTTGTTT (5) 6.9 0.0069 Cb medulloblastoma AAGGAAGAGA (6) 2.3 0.0023 Cb medulloblastoma GCTCTCCGGC (2) 2.3 0.0023 Cb medulloblastoma TCCAGATCGA 2.3 0.0023 P8 GC+1d culture GGCAGCCCCC (5) 40 0.04 P8 GC+1d culture AAGGAAGAGA (6) 27.4 0.0274 P8 GC+1d culture AGGCCACAGC (3) 4.6 0.0046 P8 GC+1d culture AAGGGAAGAG (5) 2.3 0.0023 P8 GC+1d culture AACCTTAAAA (2) 1.1 0.0011 P8 GC+1d culture ACAGCCGTGG (5) 1.1 0.0011 P8 GC+1d culture ACTTGATAAA 1.1 0.0011 P8 GC+1d culture AGAATTTGGT (6) 1.1 0.0011 P8 GC+1d culture ATGAGATGCT (5) 1.1 0.0011 P8 GC+1d culture TAGCTTGTTT (5) 1.1 0.0011 P8 GC+1d culture TCCAGATCGA 1.1 0.0011 P8 GC+1d culture TTTTGGATCT 1.1 0.0011 P8 GC+SHH+1d culture GGCAGCCCCC (5) 38.6 0.0386 P8 GC+SHH+1d culture AGGCCACAGC (3) 14.1 0.0141 P8 GC+SHH+1d culture AAGGAAGAGA (6) 11.7 0.0117 P8 GC+SHH+1d culture ACAGCCGTGG (5) 2.3 0.0023 P8 GC+SHH+1d culture TCCAGATCGA 1.2 0.0012 P8 GC+SHH+1d culture TTTTGGATCT 1.2 0.0012 3T3 fibroblasts GGCAGCCCCC (5) 105.1 0.1051 3T3 fibroblasts AAGGAAGAGA (6) 28 0.028 3T3 fibroblasts AAGGGAAGAG (5) 3.5 0.0035 3T3 fibroblasts TCCAGATCGA 3.5 0.0035 E15 cortex GGCAGCCCCC (5) 54.4 0.0544 E15 cortex AAGGAAGAGA (6) 14.8 0.0148 E15 cortex AGGCCACAGC (3) 9.9 0.0099 E15 cortex GCTCTCCGGC (2) 4.9 0.0049 E15 cortex TCCAGATCGA 4.9 0.0049 P1 cortex GGCAGCCCCC (5) 18.2 0.0182 P1 cortex AGAATTTGGT (6) 9.1 0.0091 Hypothalamus AGGCCACAGC (3) 14.5 0.0145 Hypothalamus TAGCTTGTTT (5) 12.7 0.0127 Hypothalamus AAGGAAGAGA (6) 1.8 0.0018 Hypothalamus ACTTGATAAA 1.8 0.0018 Hypothalamus GGCCAGGGCT (6) 1.8 0.0018 Hypothalamus TTTTGGATCT 1.8 0.0018 E12.5 retina GGCAGCCCCC (5) 20.7 0.0207 E12.5 retina AAGGAAGAGA (6) 15 0.015 E12.5 retina AGAATTTGGT (6) 5.6 0.0056 E12.5 retina AGGCCACAGC (3) 5.6 0.0056 E12.5 retina ACAGCCGTGG (5) 1.9 0.0019 E12.5 retina TTTTGGATCT 1.9 0.0019 E14.5 retina AGGCCACAGC (3) 21.9 0.0219 E14.5 retina AAGGAAGAGA (6) 10.9 0.0109 E14.5 retina GGCAGCCCCC (5) 7.3 0.0073 E14.5 retina ACTTGATAAA 5.5 0.0055 E14.5 retina AAGGGAAGAG (5) 1.8 0.0018 E14.5 retina AGAATTTGGT (6) 1.8 0.0018 E14.5 retina AGGCCCTGGA (3) 1.8 0.0018 E14.5 retina ATGAGATGCT (5) 1.8 0.0018 E14.5 retina GAAAAGGAGA (7) 1.8 0.0018 E14.5 retina TAGCTTGTTT (5) 1.8 0.0018 E14.5 retina TCCAGATCGA 1.8 0.0018 E16.5 retina AGGCCACAGC (3) 36.2 0.0362 E16.5 retina GGCAGCCCCC (5) 9.1 0.0091 E16.5 retina AAGGAAGAGA (6) 7.2 0.0072 E16.5 retina AACCTTAAAA (2) 1.8 0.0018 E16.5 retina AGAATTTGGT (6) 1.8 0.0018 E16.5 retina GCTCTCCGGC (2) 1.8 0.0018 E16.5 retina TAGCTTGTTT (5) 1.8 0.0018 E16.5 retina TTTTGGATCT 1.8 0.0018 E18.5 retina GGCAGCCCCC (5) 27.3 0.0273 E18.5 retina AGGCCACAGC (3) 5.5 0.0055 E18.5 retina ACAGCCGTGG (5) 3.6 0.0036 E18.5 retina ACTTGATAAA 3.6 0.0036 E18.5 retina TCCAGATCGA 1.8 0.0018 P0.5 retina GGCAGCCCCC (5) 21.6 0.0216 P0.5 retina ACAGCCGTGG (5) 9.8 0.0098 P0.5 retina AAGGAAGAGA (6) 5.9 0.0059 P0.5 retina AAGGGAAGAG (5) 2 0.002 P0.5 retina ACTTGATAAA 2 0.002 P0.5 retina TGTACCAGGT (2) 2 0.002 P2.5 retina GGCAGCCCCC (5) 26.4 0.0264 P2.5 retina AAGGAAGAGA (6) 7 0.007 P2.5 retina ACAGCCGTGG (5) 3.5 0.0035 P2.5 retina AGGCCACAGC (3) 3.5 0.0035 P2.5 retina AGGCCCTGGA (3) 1.8 0.0018 P2.5 retina GCTCTCCGGC (2) 1.8 0.0018 P4.5 retina GGCAGCCCCC (5) 15.9 0.0159 P4.5 retina AAGGAAGAGA (6) 7.9 0.0079 P4.5 retina AAGGGAAGAG (5) 2 0.002 P4.5 retina ACTTGATAAA 2 0.002 P4.5 retina AGAATTTGGT (6) 2 0.002 P4.5 retina AGGCCACAGC (3) 2 0.002 P4.5 retina GCTCTCCGGC (2) 2 0.002 P6.5 retina GGCAGCCCCC (5) 16.7 0.0167 P6.5 retina AAGGAAGAGA (6) 1.7 0.0017 P6.5 retina AGGCCACAGC (3) 1.7 0.0017 P6.5 retina AGGCCCTGGA (3) 1.7 0.0017 P6.5 retina GGCCAGGGCT (6) 1.7 0.0017 P6.5 retina TGTACCAGGT (2) 1.7 0.0017 P10.5 crx- retina AGGCCACAGC (3) 27.9 0.0279 P10.5 crx- retina GGCAGCCCCC (5) 24.2 0.0242 P10.5 crx- retina AGAATTTGGT (6) 5.6 0.0056 P10.5 crx- retina AAGGAAGAGA (6) 3.7 0.0037 P10.5 crx- retina ACTTGATAAA 3.7 0.0037 P10.5 crx- retina TAGCTTGTTT (5) 1.9 0.0019 P10.5 crx+ retina GGCAGCCCCC (5) 15.4 0.0154 P10.5 crx+ retina AGGCCACAGC (3) 1.9 0.0019 Adult retinal GGCAGCCCCC (5) 7.4 0.0074 Adult retinal AAGGAAGAGA (6) 3.7 0.0037 Adult retinal AGAATTTGGT (6) 3.7 0.0037 Adult retinal GGCCAGGGCT (6) 1.9 0.0019 ONL GGCAGCCCCC (5) 9.6 0.0096 ONL TAGCTTGTTT (5) 5.7 0.0057 ONL ACTTGATAAA 3.8 0.0038 ONL ACAGCCGTGG (5) 1.9 0.0019