Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.269474	Ctcf	CCCTC-binding factor	8		13018
Gene Ontology	DNA binding | DNA methylation | dosage compensation, by inactivation of X chromosome | imprinting | negative regulation of cell cycle | nucleic acid binding | nucleus | regulation of transcription, DNA-dependent | regulation of transcription, DNA-dependent | zinc ion binding
Human Homolog	CTCF[CCCTC-binding factor (zinc finger protein)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 74 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAGATGCACA (4) 8.2 0.0082 P8 Cb GC GAGCCAGCGT (3) 8.2 0.0082 P8 Cb GC AGACCTGTAA (2) 3.3 0.0033 P8 Cb GC CAGATAACTG 3.3 0.0033 P8 Cb GC GAAGGAAACC (4) 3.3 0.0033 P8 Cb GC CTACGATCAG (3) 1.6 0.0016 P8 Cb GC TTGGCATCCT (4) 1.6 0.0016 Cb medulloblastoma GAAGGAAACC (4) 9.2 0.0092 Cb medulloblastoma AGACCTGTAA (2) 4.6 0.0046 Cb medulloblastoma GAGCCAGCGT (3) 4.6 0.0046 Cb medulloblastoma AAGATGCACA (4) 2.3 0.0023 Cb medulloblastoma TTGGCATCCT (4) 2.3 0.0023 P8 GC+1d culture AGACCTGTAA (2) 6.8 0.0068 P8 GC+1d culture AAGATGCACA (4) 2.3 0.0023 P8 GC+1d culture TTGGCATCCT (4) 1.1 0.0011 P8 GC+SHH+1d culture AGACCTGTAA (2) 5.9 0.0059 P8 GC+SHH+1d culture GAGCCAGCGT (3) 4.7 0.0047 P8 GC+SHH+1d culture AAGATGCACA (4) 1.2 0.0012 P8 GC+SHH+1d culture ATGGACCGGT (2) 1.2 0.0012 P8 GC+SHH+1d culture GAAGGAAACC (4) 1.2 0.0012 P8 GC+SHH+1d culture TGAAAAATCC (4) 1.2 0.0012 P8 GC+SHH+1d culture TTCCCAGGGC (2) 1.2 0.0012 P8 GC+SHH+1d culture TTGGCATCCT (4) 1.2 0.0012 E15 cortex GAGGGTACAG 9.9 0.0099 E15 cortex ATGGACCGGT (2) 4.9 0.0049 E15 cortex CAGATAACTG 4.9 0.0049 P1 cortex GAGGGTACAG 4.5 0.0045 Hypothalamus GAAGGAAACC (4) 1.8 0.0018 E12.5 retina AGACCTGTAA (2) 7.5 0.0075 E12.5 retina TTGGCATCCT (4) 3.8 0.0038 E14.5 retina GAAGGAAACC (4) 3.6 0.0036 E14.5 retina TTGGCATCCT (4) 3.6 0.0036 E14.5 retina AGACCTGTAA (2) 1.8 0.0018 E14.5 retina GAGCCAGCGT (3) 1.8 0.0018 E14.5 retina TTCCCAGGGC (2) 1.8 0.0018 E16.5 retina AGACCTGTAA (2) 16.3 0.0163 E16.5 retina GAAGGAAACC (4) 3.6 0.0036 E16.5 retina GAGCCAGCGT (3) 1.8 0.0018 E16.5 retina TTCCCAGGGC (2) 1.8 0.0018 E18.5 retina AGACCTGTAA (2) 10.9 0.0109 E18.5 retina GAGCCAGCGT (3) 3.6 0.0036 E18.5 retina TTGGCATCCT (4) 3.6 0.0036 P0.5 retina AGACCTGTAA (2) 7.9 0.0079 P0.5 retina TTGGCATCCT (4) 2 0.002 P2.5 retina AGACCTGTAA (2) 12.3 0.0123 P2.5 retina GAAGGAAACC (4) 1.8 0.0018 P2.5 retina GAGCCAGCGT (3) 1.8 0.0018 P4.5 retina AGACCTGTAA (2) 9.9 0.0099 P4.5 retina TTGGCATCCT (4) 7.9 0.0079 P4.5 retina GAAGGAAACC (4) 2 0.002 P6.5 retina AGACCTGTAA (2) 3.3 0.0033 P6.5 retina CTACGATCAG (3) 1.7 0.0017 P6.5 retina GAAGGAAACC (4) 1.7 0.0017 P6.5 retina GAGCCAGCGT (3) 1.7 0.0017 P6.5 retina TGAAAAATCC (4) 1.7 0.0017 P6.5 retina TTGGCATCCT (4) 1.7 0.0017 P10.5 crx- retina GAAGGAAACC (4) 5.6 0.0056 P10.5 crx- retina AGACCTGTAA (2) 3.7 0.0037 P10.5 crx+ retina AGACCTGTAA (2) 3.8 0.0038 P10.5 crx+ retina ATGGACCGGT (2) 1.9 0.0019 P10.5 crx+ retina CAGATAACTG 1.9 0.0019 P10.5 crx+ retina GAAGGAAACC (4) 1.9 0.0019 P10.5 crx+ retina GAGCCAGCGT (3) 1.9 0.0019 P10.5 crx+ retina TTGGCATCCT (4) 1.9 0.0019 Adult retinal AGACCTGTAA (2) 5.6 0.0056 Adult retinal AAGATGCACA (4) 1.9 0.0019 Adult retinal CTACGATCAG (3) 1.9 0.0019 Adult retinal GAAGGAAACC (4) 1.9 0.0019 Adult retinal GAGCCAGCGT (3) 1.9 0.0019 Adult retinal TGAAAAATCC (4) 1.9 0.0019 ONL AGACCTGTAA (2) 1.9 0.0019 ONL ATGGACCGGT (2) 1.9 0.0019 ONL GAAGGAAACC (4) 1.9 0.0019 ONL TGAAAAATCC (4) 1.9 0.0019