Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.270641
Hpcal4
hippocalcin-like 4
4
170638
Gene Ontology
calcium ion binding
Human Homolog
HPCAL4[hippocalcin like 4]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 58 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
GGTTTTGTTT (
4
)
13.1
0.0131
P8 Cb GC
GAAACCTCTA
(
2
)
4.9
0.0049
P8 Cb GC
GGGAAAAAAA (
36
)
1.6
0.0016
Cb medulloblastoma
GGGAAAAAAA (
36
)
92.5
0.0925
Cb medulloblastoma
CTGCTTCTAA
(
2
)
4.6
0.0046
Cb medulloblastoma
GGTTTTGTTT (
4
)
4.6
0.0046
Cb medulloblastoma
GAAACCTCTA
(
2
)
2.3
0.0023
P8 GC+1d culture
GAAACCTCTA
(
2
)
4.6
0.0046
P8 GC+1d culture
GGGAAAAAAA (
36
)
1.1
0.0011
P8 GC+1d culture
GGTTTTGTTT (
4
)
1.1
0.0011
P8 GC+SHH+1d culture
GGTTTTGTTT (
4
)
3.5
0.0035
P8 GC+SHH+1d culture
GAAACCTCTA
(
2
)
2.3
0.0023
P8 GC+SHH+1d culture
GGGAAAAAAA (
36
)
1.2
0.0012
E15 cortex
GGTTTTGTTT (
4
)
9.9
0.0099
E15 cortex
GAAACCTCTA
(
2
)
4.9
0.0049
P1 cortex
GGTTTTGTTT (
4
)
18.2
0.0182
P1 cortex
GGGAAAAAAA (
36
)
4.5
0.0045
Hypothalamus
GGGAAAAAAA (
36
)
41.7
0.0417
Hypothalamus
GAAACCTCTA
(
2
)
14.5
0.0145
Hypothalamus
CTGCTTCTAA
(
2
)
5.4
0.0054
E12.5 retina
GGTTTTGTTT (
4
)
3.8
0.0038
E12.5 retina
GAAACCTCTA
(
2
)
1.9
0.0019
E14.5 retina
GGTTTTGTTT (
4
)
7.3
0.0073
E14.5 retina
GAAACCTCTA
(
2
)
5.5
0.0055
E14.5 retina
GGGAAAAAAA (
36
)
1.8
0.0018
E16.5 retina
GGTTTTGTTT (
4
)
9.1
0.0091
E16.5 retina
GAAACCTCTA
(
2
)
3.6
0.0036
E16.5 retina
GGGAAAAAAA (
36
)
3.6
0.0036
E18.5 retina
GAAACCTCTA
(
2
)
5.5
0.0055
E18.5 retina
GGTTTTGTTT (
4
)
3.6
0.0036
E18.5 retina
GGGAAAAAAA (
36
)
1.8
0.0018
P0.5 retina
GGTTTTGTTT (
4
)
11.8
0.0118
P0.5 retina
GGGAAAAAAA (
36
)
3.9
0.0039
P0.5 retina
GAAACCTCTA
(
2
)
2
0.002
P0.5 retina
GGGAAAAACA
(
4
)
2
0.002
P2.5 retina
GGTTTTGTTT (
4
)
10.6
0.0106
P2.5 retina
GGGAAAAAAA (
36
)
7
0.007
P2.5 retina
GAAACCTCTA
(
2
)
1.8
0.0018
P4.5 retina
GGGAAAAAAA (
36
)
9.9
0.0099
P4.5 retina
GAAACCTCTA
(
2
)
4
0.004
P4.5 retina
CTGCTTCTAA
(
2
)
2
0.002
P4.5 retina
GGTTTTGTTT (
4
)
2
0.002
P6.5 retina
GGGAAAAAAA (
36
)
20
0.02
P6.5 retina
GGTTTTGTTT (
4
)
8.3
0.0083
P6.5 retina
CTGCTTCTAA
(
2
)
1.7
0.0017
P6.5 retina
GAAACCTCTA
(
2
)
1.7
0.0017
P10.5 crx- retina
GGTTTTGTTT (
4
)
14.9
0.0149
P10.5 crx- retina
GGGAAAAAAA (
36
)
11.1
0.0111
P10.5 crx- retina
CTGCTTCTAA
(
2
)
3.7
0.0037
P10.5 crx- retina
GAAACCTCTA
(
2
)
1.9
0.0019
P10.5 crx+ retina
GGGAAAAAAA (
36
)
23.1
0.0231
P10.5 crx+ retina
GGTTTTGTTT (
4
)
5.8
0.0058
P10.5 crx+ retina
CTGCTTCTAA
(
2
)
1.9
0.0019
P10.5 crx+ retina
GGGAAAAACA
(
4
)
1.9
0.0019
Adult retinal
GGGAAAAAAA (
36
)
35.2
0.0352
ONL
GGGAAAAAAA (
36
)
30.6
0.0306
ONL
GGGAAAAACA
(
4
)
1.9
0.0019
ONL
GGTTTTGTTT (
4
)
1.9
0.0019
