Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.271269
5033421J10Rik
RIKEN cDNA 5033421J10 gene
3
75994
Mm.271269
5330427D05Rik
RIKEN cDNA 5330427D05 gene
3
213582
Human Homolog
FLJ21159[hypothetical protein FLJ21159]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 72 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CAAAAAAAAA (
157
)
47.3
0.0473
P8 Cb GC
TTAAAAAAGA (
10
)
4.9
0.0049
P8 Cb GC
GCATTTTCTT (
6
)
1.6
0.0016
P8 Cb GC
GTTGATTAGC
(
2
)
1.6
0.0016
Cb medulloblastoma
CAAAAAAAAA (
157
)
92.5
0.0925
Cb medulloblastoma
TTAAAAAAGA (
10
)
6.9
0.0069
Cb medulloblastoma
GCATTTTCTT (
6
)
4.6
0.0046
P8 GC+1d culture
CAAAAAAAAA (
157
)
37.7
0.0377
P8 GC+1d culture
TTAAAAAAGA (
10
)
9.1
0.0091
P8 GC+1d culture
GCATTTTCTT (
6
)
3.4
0.0034
P8 GC+1d culture
GGATGTTACT (
3
)
2.3
0.0023
P8 GC+1d culture
TATATACATA
(
3
)
2.3
0.0023
P8 GC+SHH+1d culture
CAAAAAAAAA (
157
)
58.5
0.0585
P8 GC+SHH+1d culture
GCATTTTCTT (
6
)
4.7
0.0047
P8 GC+SHH+1d culture
GGATGTTACT (
3
)
2.3
0.0023
P8 GC+SHH+1d culture
TTAAAAAAGA (
10
)
2.3
0.0023
P8 GC+SHH+1d culture
TATATACATA
(
3
)
1.2
0.0012
E15 cortex
CAAAAAAAAA (
157
)
34.6
0.0346
E15 cortex
TGACCTCACT
(
2
)
4.9
0.0049
P1 cortex
CAAAAAAAAA (
157
)
22.7
0.0227
P1 cortex
TATATACATA
(
3
)
9.1
0.0091
Hypothalamus
CAAAAAAAAA (
157
)
39.8
0.0398
Hypothalamus
GTTGATTAGC
(
2
)
3.6
0.0036
Hypothalamus
GCATTTTCTT (
6
)
1.8
0.0018
E12.5 retina
CAAAAAAAAA (
157
)
22.5
0.0225
E12.5 retina
TTAAAAAAGA (
10
)
5.6
0.0056
E12.5 retina
GGATGTTACT (
3
)
1.9
0.0019
E14.5 retina
CAAAAAAAAA (
157
)
9.1
0.0091
E14.5 retina
TTAAAAAAGA (
10
)
9.1
0.0091
E16.5 retina
CAAAAAAAAA (
157
)
9.1
0.0091
E16.5 retina
GCATTTTCTT (
6
)
3.6
0.0036
E16.5 retina
TATATACATA
(
3
)
3.6
0.0036
E16.5 retina
TGACCTCACT
(
2
)
1.8
0.0018
E18.5 retina
CAAAAAAAAA (
157
)
41.8
0.0418
E18.5 retina
GGATGTTACT (
3
)
1.8
0.0018
E18.5 retina
TATATACATA
(
3
)
1.8
0.0018
E18.5 retina
TTAAAAAAGA (
10
)
1.8
0.0018
E18.5 retina
TTTCCATCTC
(
3
)
1.8
0.0018
P0.5 retina
CAAAAAAAAA (
157
)
137.4
0.1374
P0.5 retina
GATGAAAAGG (
4
)
2
0.002
P0.5 retina
TGACCTCACT
(
2
)
2
0.002
P0.5 retina
TTAAAAAAGA (
10
)
2
0.002
P2.5 retina
CAAAAAAAAA (
157
)
52.8
0.0528
P2.5 retina
GCATTTTCTT (
6
)
5.3
0.0053
P4.5 retina
CAAAAAAAAA (
157
)
41.6
0.0416
P4.5 retina
GCATTTTCTT (
6
)
5.9
0.0059
P4.5 retina
TTAAAAAAGA (
10
)
5.9
0.0059
P4.5 retina
GGATGTTACT (
3
)
2
0.002
P6.5 retina
CAAAAAAAAA (
157
)
31.7
0.0317
P6.5 retina
GCATTTTCTT (
6
)
10
0.01
P6.5 retina
TTAAAAAAGA (
10
)
5
0.005
P6.5 retina
TATATACATA
(
3
)
1.7
0.0017
P6.5 retina
TTTCCATCTC
(
3
)
1.7
0.0017
P10.5 crx- retina
GCATTTTCTT (
6
)
14.9
0.0149
P10.5 crx- retina
CAAAAAAAAA (
157
)
13
0.013
P10.5 crx- retina
TTAAAAAAGA (
10
)
3.7
0.0037
P10.5 crx- retina
TATATACATA
(
3
)
1.9
0.0019
P10.5 crx- retina
TTTCCATCTC
(
3
)
1.9
0.0019
P10.5 crx+ retina
CAAAAAAAAA (
157
)
32.7
0.0327
P10.5 crx+ retina
TTTCCATCTC
(
3
)
11.5
0.0115
P10.5 crx+ retina
GCATTTTCTT (
6
)
9.6
0.0096
P10.5 crx+ retina
GATGAAAAGG (
4
)
1.9
0.0019
P10.5 crx+ retina
TATATACATA
(
3
)
1.9
0.0019
P10.5 crx+ retina
TTAAAAAAGA (
10
)
1.9
0.0019
Adult retinal
CAAAAAAAAA (
157
)
20.4
0.0204
Adult retinal
TTTCCATCTC
(
3
)
13
0.013
Adult retinal
GCATTTTCTT (
6
)
1.9
0.0019
Adult retinal
TGACCTCACT
(
2
)
1.9
0.0019
Adult retinal
TTAAAAAAGA (
10
)
1.9
0.0019
ONL
CAAAAAAAAA (
157
)
17.2
0.0172
ONL
TTAAAAAAGA (
10
)
5.7
0.0057
ONL
TTTCCATCTC
(
3
)
1.9
0.0019
