Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.271923	C77691	expressed sequence C77691	5		97222
Mm.271923	Gtf3c2	general transcription factor IIIC, polypeptide 2, beta	5		71752
Gene Ontology	nucleus | transcription
Human Homolog	GTF3C2[general transcription factor IIIC, polypeptide 2, beta 110kDa]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 109 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CAGTTATAAA (7) 31 0.031 P8 Cb GC AAGGCTCCTG (3) 1.6 0.0016 P8 Cb GC GCTCACAAGA (4) 1.6 0.0016 P8 Cb GC GCTCCTGTAT (4) 1.6 0.0016 P8 Cb GC TCACTACCTC (3) 1.6 0.0016 P8 Cb GC TGTTCCCAAG (2) 1.6 0.0016 P8 Cb GC TTTAAACTCT (3) 1.6 0.0016 Cb medulloblastoma CAGTTATAAA (7) 94.8 0.0948 Cb medulloblastoma TCACTACCTC (3) 20.8 0.0208 Cb medulloblastoma GCTCACAAGA (4) 2.3 0.0023 Cb medulloblastoma GCTCCTGTAT (4) 2.3 0.0023 P8 GC+1d culture CAGTTATAAA (7) 40 0.04 P8 GC+1d culture TCACTACCTC (3) 10.3 0.0103 P8 GC+1d culture TGTTCCCAAG (2) 8 0.008 P8 GC+1d culture AAGGCTCCTG (3) 3.4 0.0034 P8 GC+1d culture CTCAAGGCCC (6) 1.1 0.0011 P8 GC+1d culture GCTCCTGTAT (4) 1.1 0.0011 P8 GC+1d culture TTTAAACTCT (3) 1.1 0.0011 P8 GC+SHH+1d culture CAGTTATAAA (7) 35.1 0.0351 P8 GC+SHH+1d culture TCACTACCTC (3) 8.2 0.0082 P8 GC+SHH+1d culture AAGGCTCCTG (3) 1.2 0.0012 P8 GC+SHH+1d culture GCTCACAAGA (4) 1.2 0.0012 P8 GC+SHH+1d culture GCTCCTGTAT (4) 1.2 0.0012 P8 GC+SHH+1d culture GTAGTTTTCT (9) 1.2 0.0012 P8 GC+SHH+1d culture TCCAGCCCTT (5) 1.2 0.0012 P8 GC+SHH+1d culture TTTAAACTCT (3) 1.2 0.0012 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 E15 cortex GCTCACAAGA (4) 9.9 0.0099 E15 cortex ATGGTGGTAG (2) 4.9 0.0049 E15 cortex GCTCCTGTAT (4) 4.9 0.0049 E15 cortex GTCATAGCTG (590) 4.9 0.0049 P1 cortex AAGGCTCCTG (3) 9.1 0.0091 P1 cortex CAGTTATAAA (7) 9.1 0.0091 P1 cortex TCACTACCTC (3) 9.1 0.0091 P1 cortex TTTAAACTCT (3) 4.5 0.0045 Hypothalamus CAGTTATAAA (7) 43.5 0.0435 Hypothalamus GTAGTTTTCT (9) 1.8 0.0018 Hypothalamus TCACTACCTC (3) 1.8 0.0018 E12.5 retina TGTTCCCAAG (2) 5.6 0.0056 E12.5 retina CAGTTATAAA (7) 3.8 0.0038 E12.5 retina TTTAAACTCT (3) 3.8 0.0038 E12.5 retina CAGGAAAGAG (4) 1.9 0.0019 E14.5 retina CTCAAGGCCC (6) 1.8 0.0018 E14.5 retina GCTCACAAGA (4) 1.8 0.0018 E14.5 retina TCACTACCTC (3) 1.8 0.0018 E14.5 retina TGTTCCCAAG (2) 1.8 0.0018 E14.5 retina TTTAAACTCT (3) 1.8 0.0018 E16.5 retina TTTAAACTCT (3) 3.6 0.0036 E16.5 retina CAGTTATAAA (7) 1.8 0.0018 E16.5 retina GCTCACAAGA (4) 1.8 0.0018 E16.5 retina GCTCCTGTAT (4) 1.8 0.0018 E16.5 retina TCCAGCCCTT (5) 1.8 0.0018 E16.5 retina TGTTCCCAAG (2) 1.8 0.0018 E18.5 retina CAGTTATAAA (7) 14.6 0.0146 E18.5 retina TGTTCCCAAG (2) 3.6 0.0036 E18.5 retina AGTGGATTCC (3) 1.8 0.0018 E18.5 retina CAGGAAAGAG (4) 1.8 0.0018 E18.5 retina TTTAAACTCT (3) 1.8 0.0018 P0.5 retina CAGTTATAAA (7) 3.9 0.0039 P0.5 retina CTCAAGGCCC (6) 3.9 0.0039 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina TTTAAACTCT (3) 3.9 0.0039 P0.5 retina CAGGAAAGAG (4) 2 0.002 P0.5 retina TCACTACCTC (3) 2 0.002 P2.5 retina CAGTTATAAA (7) 10.6 0.0106 P2.5 retina TGTTCCCAAG (2) 3.5 0.0035 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P2.5 retina TCACTACCTC (3) 1.8 0.0018 P2.5 retina TTTAAACTCT (3) 1.8 0.0018 P4.5 retina CAGTTATAAA (7) 9.9 0.0099 P4.5 retina TTTAAACTCT (3) 5.9 0.0059 P4.5 retina GCTCCTGTAT (4) 2 0.002 P4.5 retina GTCATAGCTG (590) 2 0.002 P4.5 retina TGTTCCCAAG (2) 2 0.002 P6.5 retina CAGTTATAAA (7) 20 0.02 P6.5 retina TGTTCCCAAG (2) 6.7 0.0067 P6.5 retina GGCTCCCCAA (3) 3.3 0.0033 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina TTTAAACTCT (3) 3.3 0.0033 P6.5 retina AAGGCTCCTG (3) 1.7 0.0017 P6.5 retina CTCAAGGCCC (6) 1.7 0.0017 P6.5 retina TCACTACCTC (3) 1.7 0.0017 P6.5 retina TCCAGCCCTT (5) 1.7 0.0017 P10.5 crx- retina CAGTTATAAA (7) 11.1 0.0111 P10.5 crx- retina AAGGCTCCTG (3) 1.9 0.0019 P10.5 crx- retina CTCAAGGCCC (6) 1.9 0.0019 P10.5 crx- retina GCTCACAAGA (4) 1.9 0.0019 P10.5 crx- retina TTTAAACTCT (3) 1.9 0.0019 P10.5 crx+ retina CAGTTATAAA (7) 11.5 0.0115 P10.5 crx+ retina TTTAAACTCT (3) 3.8 0.0038 P10.5 crx+ retina CAGGAAAGAG (4) 1.9 0.0019 P10.5 crx+ retina GCTCACAAGA (4) 1.9 0.0019 P10.5 crx+ retina GCTCCTGTAT (4) 1.9 0.0019 P10.5 crx+ retina TCCAGCCCTT (5) 1.9 0.0019 Adult retinal CAGTTATAAA (7) 11.1 0.0111 Adult retinal TGTTCCCAAG (2) 3.7 0.0037 Adult retinal TTTAAACTCT (3) 3.7 0.0037 Adult retinal AAGGCTCCTG (3) 1.9 0.0019 Adult retinal GATTTGAGGA (5) 1.9 0.0019 Adult retinal GCTCACAAGA (4) 1.9 0.0019 Adult retinal GGCTCCCCAA (3) 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 ONL GATTTGAGGA (5) 9.6 0.0096 ONL CAGTTATAAA (7) 7.7 0.0077 ONL GTCATAGCTG (590) 5.7 0.0057 ONL ATGGTGGTAG (2) 3.8 0.0038 ONL GTAGTTTTCT (9) 3.8 0.0038 ONL AAGGCTCCTG (3) 1.9 0.0019 ONL TCCAGCCCTT (5) 1.9 0.0019