Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.274285
Opa1
optic atrophy 1 homolog (human)
16
16 21.5 cM
74143
Mm.274285
D630050H08Rik
RIKEN cDNA D630050H08 gene
16
106170
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 58 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CGCTGTATTC (
4
)
31
0.031
P8 Cb GC
TCGTCACTGT
(
2
)
8.2
0.0082
P8 Cb GC
CTGCACACAG
(
2
)
1.6
0.0016
Cb medulloblastoma
TCGTCACTGT
(
2
)
6.9
0.0069
P8 GC+1d culture
CGCTGTATTC (
4
)
9.1
0.0091
P8 GC+1d culture
TCGTCACTGT
(
2
)
3.4
0.0034
P8 GC+1d culture
AAAGAAAGCT
(
6
)
1.1
0.0011
P8 GC+1d culture
CTGCACACAG
(
2
)
1.1
0.0011
P8 GC+SHH+1d culture
CGCTGTATTC (
4
)
25.8
0.0258
P8 GC+SHH+1d culture
TCGTCACTGT
(
2
)
10.5
0.0105
P8 GC+SHH+1d culture
ATGGGCAGAC (
5
)
1.2
0.0012
P8 GC+SHH+1d culture
CTGCACACAG
(
2
)
1.2
0.0012
3T3 fibroblasts
CGCTGTATTC (
4
)
7
0.007
3T3 fibroblasts
CAGGATTCAG
(
4
)
3.5
0.0035
E15 cortex
TCGTCACTGT
(
2
)
9.9
0.0099
E15 cortex
AAAGAAAGCT
(
6
)
4.9
0.0049
E15 cortex
CGCTGTATTC (
4
)
4.9
0.0049
P1 cortex
TCGTCACTGT
(
2
)
18.2
0.0182
Hypothalamus
GCAATTTGAT (
3
)
1.8
0.0018
Hypothalamus
TCGTCACTGT
(
2
)
1.8
0.0018
E12.5 retina
CGCTGTATTC (
4
)
18.8
0.0188
E12.5 retina
AAAGAAAGCT
(
6
)
1.9
0.0019
E12.5 retina
GCAATTTGAT (
3
)
1.9
0.0019
E12.5 retina
GGTGTGATGA (
6
)
1.9
0.0019
E12.5 retina
TCTGTAGTTC
(
3
)
1.9
0.0019
E14.5 retina
CGCTGTATTC (
4
)
18.2
0.0182
E14.5 retina
TCGTCACTGT
(
2
)
7.3
0.0073
E14.5 retina
GCATTCCAGC (
4
)
5.5
0.0055
E14.5 retina
CTGCACACAG
(
2
)
3.6
0.0036
E16.5 retina
CGCTGTATTC (
4
)
36.2
0.0362
E18.5 retina
CGCTGTATTC (
4
)
9.1
0.0091
E18.5 retina
GCAATTTGAT (
3
)
7.3
0.0073
E18.5 retina
TCGTCACTGT
(
2
)
1.8
0.0018
P0.5 retina
CGCTGTATTC (
4
)
9.8
0.0098
P0.5 retina
GCAATTTGAT (
3
)
3.9
0.0039
P0.5 retina
TCGTCACTGT
(
2
)
3.9
0.0039
P2.5 retina
CGCTGTATTC (
4
)
8.8
0.0088
P2.5 retina
GCAATTTGAT (
3
)
5.3
0.0053
P2.5 retina
TCGTCACTGT
(
2
)
3.5
0.0035
P2.5 retina
TCTGTAGTTC
(
3
)
3.5
0.0035
P4.5 retina
CGCTGTATTC (
4
)
4
0.004
P4.5 retina
GCAATTTGAT (
3
)
2
0.002
P6.5 retina
GGTGTGATGA (
6
)
3.3
0.0033
P6.5 retina
TCGTCACTGT
(
2
)
3.3
0.0033
P6.5 retina
CAGGATTCAG
(
4
)
1.7
0.0017
P6.5 retina
CGCTGTATTC (
4
)
1.7
0.0017
P6.5 retina
GCAATTTGAT (
3
)
1.7
0.0017
P10.5 crx- retina
TCGTCACTGT
(
2
)
5.6
0.0056
P10.5 crx+ retina
TCGTCACTGT
(
2
)
5.8
0.0058
P10.5 crx+ retina
GCAATTTGAT (
3
)
3.8
0.0038
P10.5 crx+ retina
TCTGTAGTTC
(
3
)
3.8
0.0038
P10.5 crx+ retina
CTGCACACAG
(
2
)
1.9
0.0019
Adult retinal
CTGCACACAG
(
2
)
3.7
0.0037
Adult retinal
GGTGTGATGA (
6
)
3.7
0.0037
Adult retinal
TCGTCACTGT
(
2
)
3.7
0.0037
ONL
TCGTCACTGT
(
2
)
7.7
0.0077
ONL
CGCTGTATTC (
4
)
1.9
0.0019
ONL
TCTGTAGTTC
(
3
)
1.9
0.0019
