Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.274690	D930017J03Rik	RIKEN cDNA D930017J03 gene	14		320391
Mm.274690	Hnrpc	heterogeneous nuclear ribonucleoprotein C	14	14 20.0 cM	15381
Gene Ontology	nucleus | pronucleus | ribonucleoprotein complex | RNA binding | RNA splicing | viral nucleocapsid
Human Homolog	HNRPC[heterogeneous nuclear ribonucleoprotein C (C1/C2)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 186 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGTTGCTGG (369) 68.5 0.0685 P8 Cb GC CCTTTAATCC (355) 52.2 0.0522 P8 Cb GC GGATTTGGCC (6) 19.6 0.0196 P8 Cb GC ATTGCCCTGC (2) 13.1 0.0131 P8 Cb GC ATAAAACTGA (4) 4.9 0.0049 P8 Cb GC AATTCCCGTG (2) 3.3 0.0033 P8 Cb GC GAGTCTGAGG (4) 3.3 0.0033 P8 Cb GC GGTTATTTTT (3) 3.3 0.0033 P8 Cb GC TGAAGTACTC (3) 3.3 0.0033 P8 Cb GC ACTTCATAGT (4) 1.6 0.0016 P8 Cb GC CATACCAATA (2) 1.6 0.0016 P8 Cb GC TCATATCTGT (4) 1.6 0.0016 P8 Cb GC TTGCTGCGGC (2) 1.6 0.0016 Cb medulloblastoma TGGTTGCTGG (369) 113.3 0.1133 Cb medulloblastoma CCTTTAATCC (355) 41.6 0.0416 Cb medulloblastoma TGAAGTACTC (3) 20.8 0.0208 Cb medulloblastoma ATTGCCCTGC (2) 6.9 0.0069 Cb medulloblastoma GAGTCTGAGG (4) 6.9 0.0069 Cb medulloblastoma ATAAAACTGA (4) 2.3 0.0023 Cb medulloblastoma GGTTATTTTT (3) 2.3 0.0023 Cb medulloblastoma TTGCTGCGGC (2) 2.3 0.0023 P8 GC+1d culture TGGTTGCTGG (369) 57.1 0.0571 P8 GC+1d culture CCTTTAATCC (355) 32 0.032 P8 GC+1d culture ATTGCCCTGC (2) 19.4 0.0194 P8 GC+1d culture TGAAGTACTC (3) 8 0.008 P8 GC+1d culture GGATTTGGCC (6) 5.7 0.0057 P8 GC+1d culture GGTTATTTTT (3) 5.7 0.0057 P8 GC+1d culture TCATATCTGT (4) 3.4 0.0034 P8 GC+1d culture ATAAAACTGA (4) 2.3 0.0023 P8 GC+1d culture AAAGCATAAA (2) 1.1 0.0011 P8 GC+1d culture AAAGCATAGA (2) 1.1 0.0011 P8 GC+1d culture AATTAATGAA (3) 1.1 0.0011 P8 GC+1d culture AATTAGTGAA (2) 1.1 0.0011 P8 GC+1d culture TTGCTGCGGC (2) 1.1 0.0011 P8 GC+SHH+1d culture TGGTTGCTGG (369) 89 0.089 P8 GC+SHH+1d culture ATTGCCCTGC (2) 30.4 0.0304 P8 GC+SHH+1d culture CCTTTAATCC (355) 25.8 0.0258 P8 GC+SHH+1d culture TGAAGTACTC (3) 11.7 0.0117 P8 GC+SHH+1d culture TCATATCTGT (4) 5.9 0.0059 P8 GC+SHH+1d culture GGTTATTTTT (3) 4.7 0.0047 P8 GC+SHH+1d culture GGATTTGGCC (6) 3.5 0.0035 P8 GC+SHH+1d culture GAGTCTGAGG (4) 2.3 0.0023 P8 GC+SHH+1d culture AATTCCCGTG (2) 1.2 0.0012 P8 GC+SHH+1d culture ACTTCATAGT (4) 1.2 0.0012 P8 GC+SHH+1d culture ATAAAACTGA (4) 1.2 0.0012 P8 GC+SHH+1d culture CATACCAATA (2) 1.2 0.0012 3T3 fibroblasts TGGTTGCTGG (369) 220.8 0.2208 3T3 fibroblasts CCTTTAATCC (355) 70.1 0.0701 3T3 fibroblasts ATTGCCCTGC (2) 28 0.028 3T3 fibroblasts TGAAGTACTC (3) 10.5 0.0105 3T3 fibroblasts GGATTTGGCC (6) 3.5 0.0035 3T3 fibroblasts GGTTATTTTT (3) 3.5 0.0035 3T3 fibroblasts TCATATCTGT (4) 3.5 0.0035 E15 cortex TGGTTGCTGG (369) 277.1 0.2771 E15 cortex CCTTTAATCC (355) 54.4 0.0544 E15 cortex ATTGCCCTGC (2) 19.8 0.0198 E15 cortex GGTTATTTTT (3) 9.9 0.0099 E15 cortex TCAAATGCAT (3) 4.9 0.0049 E15 cortex TCATATCTGT (4) 4.9 0.0049 P1 cortex CCTTTAATCC (355) 154.5 0.1545 P1 cortex TGGTTGCTGG (369) 86.4 0.0864 P1 cortex AATTAGTGAA (2) 4.5 0.0045 P1 cortex CATACCAATA (2) 4.5 0.0045 P1 cortex GGTTATTTTT (3) 4.5 0.0045 P1 cortex TCATATCTGT (4) 4.5 0.0045 P1 cortex TGAAGTACTC (3) 4.5 0.0045 Hypothalamus TGGTTGCTGG (369) 349.6 0.3496 Hypothalamus CCTTTAATCC (355) 19.9 0.0199 Hypothalamus TGAAGTACTC (3) 19.9 0.0199 Hypothalamus ATTGCCCTGC (2) 1.8 0.0018 Hypothalamus GGTTATTTTT (3) 1.8 0.0018 Hypothalamus TTGCTGCGGC (2) 1.8 0.0018 E12.5 retina TGGTTGCTGG (369) 157.7 0.1577 E12.5 retina CCTTTAATCC (355) 75.1 0.0751 E12.5 retina ATTGCCCTGC (2) 26.3 0.0263 E12.5 retina GGTTATTTTT (3) 5.6 0.0056 E12.5 retina TCATATCTGT (4) 5.6 0.0056 E12.5 retina GGATTTGGCC (6) 3.8 0.0038 E12.5 retina AATTCCCGTG (2) 1.9 0.0019 E12.5 retina ATAAAACTGA (4) 1.9 0.0019 E12.5 retina CATACCAATA (2) 1.9 0.0019 E12.5 retina TTGCTGCGGC (2) 1.9 0.0019 E14.5 retina TGGTTGCTGG (369) 936.5 0.9365 E14.5 retina CCTTTAATCC (355) 120.3 0.1203 E14.5 retina GGATTTGGCC (6) 16.4 0.0164 E14.5 retina ATTGCCCTGC (2) 9.1 0.0091 E14.5 retina AAAGGCTTTG (5) 3.6 0.0036 E14.5 retina GAGTCTGAGG (4) 3.6 0.0036 E14.5 retina GGTTATTTTT (3) 3.6 0.0036 E14.5 retina TGAAGTACTC (3) 3.6 0.0036 E14.5 retina AAAGCATAAA (2) 1.8 0.0018 E14.5 retina TCATATCTGT (4) 1.8 0.0018 E16.5 retina TGGTTGCTGG (369) 767.9 0.7679 E16.5 retina CCTTTAATCC (355) 68.8 0.0688 E16.5 retina ATTGCCCTGC (2) 3.6 0.0036 E16.5 retina GAGTCTGAGG (4) 3.6 0.0036 E16.5 retina TCATATCTGT (4) 3.6 0.0036 E16.5 retina TGAAGTACTC (3) 3.6 0.0036 E16.5 retina AAAGGCTTTG (5) 1.8 0.0018 E16.5 retina ACTTCATAGT (4) 1.8 0.0018 E16.5 retina CATACCAATA (2) 1.8 0.0018 E16.5 retina GGATTTGGCC (6) 1.8 0.0018 E16.5 retina GGTTATTTTT (3) 1.8 0.0018 E16.5 retina TCAAATGCAT (3) 1.8 0.0018 E18.5 retina TGGTTGCTGG (369) 252.8 0.2528 E18.5 retina CCTTTAATCC (355) 23.6 0.0236 E18.5 retina ATTGCCCTGC (2) 20 0.02 E18.5 retina GGATTTGGCC (6) 16.4 0.0164 E18.5 retina TGAAGTACTC (3) 14.6 0.0146 E18.5 retina GGTTATTTTT (3) 9.1 0.0091 E18.5 retina AAAGCATAGA (2) 1.8 0.0018 E18.5 retina ATAAAACTGA (4) 1.8 0.0018 E18.5 retina TCAAATGCAT (3) 1.8 0.0018 P0.5 retina TGGTTGCTGG (369) 190.4 0.1904 P0.5 retina CCTTTAATCC (355) 72.6 0.0726 P0.5 retina ATTGCCCTGC (2) 15.7 0.0157 P0.5 retina TGAAGTACTC (3) 11.8 0.0118 P0.5 retina GGTTATTTTT (3) 5.9 0.0059 P0.5 retina AATTCCCGTG (2) 2 0.002 P0.5 retina GGATTTGGCC (6) 2 0.002 P0.5 retina TCAAATGCAT (3) 2 0.002 P0.5 retina TCATATCTGT (4) 2 0.002 P2.5 retina TGGTTGCTGG (369) 165.4 0.1654 P2.5 retina CCTTTAATCC (355) 70.4 0.0704 P2.5 retina TGAAGTACTC (3) 14.1 0.0141 P2.5 retina GGTTATTTTT (3) 7 0.007 P2.5 retina AAAGCATAAA (2) 1.8 0.0018 P2.5 retina AAAGCATAGA (2) 1.8 0.0018 P2.5 retina AAAGGCTTTG (5) 1.8 0.0018 P2.5 retina ATTGCCCTGC (2) 1.8 0.0018 P2.5 retina TCATATCTGT (4) 1.8 0.0018 P2.5 retina TTGCTGCGGC (2) 1.8 0.0018 P4.5 retina TGGTTGCTGG (369) 150.6 0.1506 P4.5 retina CCTTTAATCC (355) 43.6 0.0436 P4.5 retina ATTGCCCTGC (2) 17.8 0.0178 P4.5 retina TGAAGTACTC (3) 7.9 0.0079 P4.5 retina GGTTATTTTT (3) 5.9 0.0059 P4.5 retina TCATATCTGT (4) 4 0.004 P4.5 retina AATTCCCGTG (2) 2 0.002 P4.5 retina ATAAAACTGA (4) 2 0.002 P6.5 retina TGGTTGCTGG (369) 156.7 0.1567 P6.5 retina CCTTTAATCC (355) 70 0.07 P6.5 retina ATTGCCCTGC (2) 20 0.02 P6.5 retina TGAAGTACTC (3) 16.7 0.0167 P6.5 retina GGTTATTTTT (3) 6.7 0.0067 P6.5 retina GGATTTGGCC (6) 3.3 0.0033 P6.5 retina AATTAATGAA (3) 1.7 0.0017 P6.5 retina ATAAAACTGA (4) 1.7 0.0017 P6.5 retina CATACCAATA (2) 1.7 0.0017 P6.5 retina TCATATCTGT (4) 1.7 0.0017 P6.5 retina TTGCTGCGGC (2) 1.7 0.0017 P10.5 crx- retina TGGTTGCTGG (369) 280.5 0.2805 P10.5 crx- retina CCTTTAATCC (355) 63.2 0.0632 P10.5 crx- retina ATTGCCCTGC (2) 13 0.013 P10.5 crx- retina TGAAGTACTC (3) 11.1 0.0111 P10.5 crx- retina GGATTTGGCC (6) 3.7 0.0037 P10.5 crx- retina AAAGCATAGA (2) 1.9 0.0019 P10.5 crx- retina ATAAAACTGA (4) 1.9 0.0019 P10.5 crx- retina CATACCAATA (2) 1.9 0.0019 P10.5 crx- retina TCATATCTGT (4) 1.9 0.0019 P10.5 crx+ retina TGGTTGCTGG (369) 101.9 0.1019 P10.5 crx+ retina CCTTTAATCC (355) 38.4 0.0384 P10.5 crx+ retina ATTGCCCTGC (2) 23.1 0.0231 P10.5 crx+ retina TGAAGTACTC (3) 17.3 0.0173 P10.5 crx+ retina TTGCTGCGGC (2) 3.8 0.0038 P10.5 crx+ retina AATTCCCGTG (2) 1.9 0.0019 P10.5 crx+ retina ATAAAACTGA (4) 1.9 0.0019 P10.5 crx+ retina GAGTCTGAGG (4) 1.9 0.0019 P10.5 crx+ retina GGTTATTTTT (3) 1.9 0.0019 Adult retinal TGGTTGCTGG (369) 214.8 0.2148 Adult retinal CCTTTAATCC (355) 129.6 0.1296 Adult retinal ATTGCCCTGC (2) 9.3 0.0093 Adult retinal TGAAGTACTC (3) 7.4 0.0074 Adult retinal TTGCTGCGGC (2) 3.7 0.0037 Adult retinal AATTAATGAA (3) 1.9 0.0019 Adult retinal ACTTCATAGT (4) 1.9 0.0019 Adult retinal ATAAAACTGA (4) 1.9 0.0019 Adult retinal GGTTATTTTT (3) 1.9 0.0019 ONL TGGTTGCTGG (369) 398.4 0.3984 ONL CCTTTAATCC (355) 84.3 0.0843 ONL GGATTTGGCC (6) 28.7 0.0287 ONL TGAAGTACTC (3) 5.7 0.0057 ONL ATTGCCCTGC (2) 3.8 0.0038 ONL AATTAATGAA (3) 1.9 0.0019 ONL AATTAGTGAA (2) 1.9 0.0019 ONL TCAAATGCAT (3) 1.9 0.0019