Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.275195	Ubr1	ubiquitin protein ligase E3 component n-recognin 1	2	2 67.4 cM	22222
Gene Ontology	intracellular | ligase activity | protein binding | protein biosynthesis | ribosome | structural constituent of ribosome | ubiquitin conjugating enzyme activity | ubiquitin cycle | ubiquitin ligase complex | ubiquitin-dependent protein catabolism | ubiquitin-dependent protein catabolism | ubiquitin-protein ligase activity | ubiquitin-protein ligase activity
Human Homolog	UBR1[ubiquitin protein ligase E3 component n-recognin 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 51 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATGAAGTTAT (2) 4.9 0.0049 P8 Cb GC AGCAAAATAT (3) 3.3 0.0033 Cb medulloblastoma AGCAAAATAT (3) 2.3 0.0023 Cb medulloblastoma ATGAAGTTAT (2) 2.3 0.0023 Cb medulloblastoma TAAACATCTT (4) 2.3 0.0023 P8 GC+1d culture AGCAAAATAT (3) 3.4 0.0034 P8 GC+1d culture ATGAAGTTAT (2) 3.4 0.0034 P8 GC+1d culture TAAACATCTT (4) 3.4 0.0034 P8 GC+1d culture TCTTTAATCC (30) 2.3 0.0023 P8 GC+SHH+1d culture ATGAAGTTAT (2) 4.7 0.0047 P8 GC+SHH+1d culture TAAACATCTT (4) 4.7 0.0047 P8 GC+SHH+1d culture TCTTTAATCC (30) 4.7 0.0047 P8 GC+SHH+1d culture AGCAAAATAT (3) 2.3 0.0023 3T3 fibroblasts TCTTTAATCC (30) 7 0.007 E15 cortex TCTTTAATCC (30) 4.9 0.0049 P1 cortex TCTTTAATCC (30) 9.1 0.0091 Hypothalamus GGGGGTCACA 3.6 0.0036 E12.5 retina AGCAAAATAT (3) 3.8 0.0038 E12.5 retina TTGCAGTCAC 1.9 0.0019 E14.5 retina TCTTTAATCC (30) 21.9 0.0219 E14.5 retina ATGAAGTTAT (2) 3.6 0.0036 E16.5 retina TCTTTAATCC (30) 9.1 0.0091 E16.5 retina TTGCAGTCAC 5.4 0.0054 E16.5 retina ATGAAGTTAT (2) 1.8 0.0018 E18.5 retina ATGAAGTTAT (2) 1.8 0.0018 E18.5 retina TCTTTAATCC (30) 1.8 0.0018 P0.5 retina AGCAAAATAT (3) 3.9 0.0039 P0.5 retina GGGGGTCACA 2 0.002 P0.5 retina TCTTTAATCC (30) 2 0.002 P2.5 retina AGCAAAATAT (3) 3.5 0.0035 P2.5 retina ATGAAGTTAT (2) 1.8 0.0018 P2.5 retina TCTTTAATCC (30) 1.8 0.0018 P2.5 retina TTGCAGTCAC 1.8 0.0018 P4.5 retina TCTTTAATCC (30) 9.9 0.0099 P4.5 retina ATGAAGTTAT (2) 4 0.004 P4.5 retina TAAACATCTT (4) 2 0.002 P6.5 retina AGCAAAATAT (3) 1.7 0.0017 P6.5 retina TAAACATCTT (4) 1.7 0.0017 P10.5 crx- retina AGCAAAATAT (3) 11.1 0.0111 P10.5 crx- retina ATGAAGTTAT (2) 3.7 0.0037 P10.5 crx- retina TCTTTAATCC (30) 1.9 0.0019 P10.5 crx- retina TTGCAGTCAC 1.9 0.0019 P10.5 crx+ retina TAAACATCTT (4) 1.9 0.0019 P10.5 crx+ retina TCTTTAATCC (30) 1.9 0.0019 Adult retinal TCTTTAATCC (30) 7.4 0.0074 Adult retinal GGGGGTCACA 3.7 0.0037 Adult retinal AGCAAAATAT (3) 1.9 0.0019 Adult retinal ATGAAGTTAT (2) 1.9 0.0019 Adult retinal TAAACATCTT (4) 1.9 0.0019 ONL TCTTTAATCC (30) 13.4 0.0134 ONL ATGAAGTTAT (2) 3.8 0.0038