Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.276030	2600009P04Rik	RIKEN cDNA 2600009P04 gene	9		66572
Mm.276030	Elavl3	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	9	9 5.0 cM	15571
Gene Ontology	cell differentiation | neurogenesis | RNA binding
Human Homolog	ELAVL3[ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 128 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GAAAAAAAAA (204) 45.7 0.0457 P8 Cb GC CCAGAAAATA (2) 21.2 0.0212 P8 Cb GC ACAGTCTATG (4) 6.5 0.0065 P8 Cb GC GTGATGGCTT (2) 6.5 0.0065 P8 Cb GC AGTTTGCAGG (2) 4.9 0.0049 P8 Cb GC AAAGAGGGGA (6) 3.3 0.0033 P8 Cb GC GGATGGCTTA (3) 3.3 0.0033 P8 Cb GC ATTCCCCCAC (2) 1.6 0.0016 P8 Cb GC CAGGAGGCAT (4) 1.6 0.0016 P8 Cb GC CCCCACACAC (5) 1.6 0.0016 Cb medulloblastoma GAAAAAAAAA (204) 173.4 0.1734 Cb medulloblastoma CCAGAAAATA (2) 32.4 0.0324 Cb medulloblastoma ACAGTCTATG (4) 4.6 0.0046 Cb medulloblastoma GGATGGCTTA (3) 2.3 0.0023 Cb medulloblastoma GTGATGGCTT (2) 2.3 0.0023 P8 GC+1d culture CCAGAAAATA (2) 41.1 0.0411 P8 GC+1d culture GAAAAAAAAA (204) 41.1 0.0411 P8 GC+1d culture CCCCACACAC (5) 10.3 0.0103 P8 GC+1d culture ACAGTCTATG (4) 9.1 0.0091 P8 GC+1d culture AGTTTGCAGG (2) 6.8 0.0068 P8 GC+1d culture AAAGAGGGGA (6) 2.3 0.0023 P8 GC+1d culture CAGGAGGCAT (4) 2.3 0.0023 P8 GC+1d culture GTGATGGCTT (2) 2.3 0.0023 P8 GC+1d culture TAAAAGTCAG (3) 2.3 0.0023 P8 GC+1d culture ATTCCCCCAC (2) 1.1 0.0011 P8 GC+1d culture GCTATCGCCA (2) 1.1 0.0011 P8 GC+1d culture TGCGGAGGGC (2) 1.1 0.0011 P8 GC+1d culture TTCCTGGTTG (4) 1.1 0.0011 P8 GC+1d culture TTTGAAACTT (4) 1.1 0.0011 P8 GC+SHH+1d culture GAAAAAAAAA (204) 77.3 0.0773 P8 GC+SHH+1d culture CCAGAAAATA (2) 25.8 0.0258 P8 GC+SHH+1d culture ACAGTCTATG (4) 7 0.007 P8 GC+SHH+1d culture GTGATGGCTT (2) 4.7 0.0047 P8 GC+SHH+1d culture CCCCACACAC (5) 3.5 0.0035 P8 GC+SHH+1d culture AGTTTGCAGG (2) 1.2 0.0012 P8 GC+SHH+1d culture CAGGAGGCAT (4) 1.2 0.0012 P8 GC+SHH+1d culture GGATGGCTTA (3) 1.2 0.0012 P8 GC+SHH+1d culture TGATGTGTGA (6) 1.2 0.0012 E15 cortex GAAAAAAAAA (204) 54.4 0.0544 E15 cortex CCCCACACAC (5) 24.7 0.0247 E15 cortex GGATGGCTTA (3) 19.8 0.0198 E15 cortex CCAGAAAATA (2) 9.9 0.0099 E15 cortex AAAGAGGGGA (6) 4.9 0.0049 E15 cortex AGTTTGCAGG (2) 4.9 0.0049 E15 cortex GCTATCGCCA (2) 4.9 0.0049 P1 cortex GAAAAAAAAA (204) 45.5 0.0455 P1 cortex CCAGAAAATA (2) 31.8 0.0318 P1 cortex ACAGTCTATG (4) 27.3 0.0273 P1 cortex CCCCACACAC (5) 18.2 0.0182 P1 cortex TCCACAGCAT (4) 4.5 0.0045 Hypothalamus GAAAAAAAAA (204) 67 0.067 Hypothalamus CCAGAAAATA (2) 5.4 0.0054 Hypothalamus TAAAAGTCAG (3) 3.6 0.0036 Hypothalamus TCCACAGCAT (4) 3.6 0.0036 Hypothalamus ACAGTCTATG (4) 1.8 0.0018 Hypothalamus CACTTGGACC (2) 1.8 0.0018 Hypothalamus CCCCACACAC (5) 1.8 0.0018 Hypothalamus GTGATGGCTT (2) 1.8 0.0018 E12.5 retina GAAAAAAAAA (204) 46.9 0.0469 E12.5 retina ACAGTCTATG (4) 5.6 0.0056 E12.5 retina CCAGAAAATA (2) 5.6 0.0056 E12.5 retina AGTTTGCAGG (2) 3.8 0.0038 E12.5 retina GGATGGCTTA (3) 3.8 0.0038 E12.5 retina TGCGGAGGGC (2) 1.9 0.0019 E14.5 retina GAAAAAAAAA (204) 34.6 0.0346 E14.5 retina CCAGAAAATA (2) 12.8 0.0128 E14.5 retina ACAGTCTATG (4) 10.9 0.0109 E14.5 retina CACTTGGACC (2) 1.8 0.0018 E14.5 retina GGATGGCTTA (3) 1.8 0.0018 E14.5 retina TAAAAGTCAG (3) 1.8 0.0018 E14.5 retina TGATGTGTGA (6) 1.8 0.0018 E14.5 retina TTTGAAACTT (4) 1.8 0.0018 E16.5 retina ACAGTCTATG (4) 27.2 0.0272 E16.5 retina GAAAAAAAAA (204) 23.5 0.0235 E16.5 retina CCCCACACAC (5) 9.1 0.0091 E16.5 retina CCAGAAAATA (2) 7.2 0.0072 E16.5 retina AAAGAGGGGA (6) 1.8 0.0018 E16.5 retina ATTCCCCCAC (2) 1.8 0.0018 E16.5 retina GTGATGGCTT (2) 1.8 0.0018 E16.5 retina TAAAAGTCAG (3) 1.8 0.0018 E18.5 retina GAAAAAAAAA (204) 65.5 0.0655 E18.5 retina CCAGAAAATA (2) 18.2 0.0182 E18.5 retina GTGATGGCTT (2) 3.6 0.0036 E18.5 retina AAAGAGGGGA (6) 1.8 0.0018 E18.5 retina ACAGTCTATG (4) 1.8 0.0018 E18.5 retina TTTGAAACTT (4) 1.8 0.0018 P0.5 retina GAAAAAAAAA (204) 35.3 0.0353 P0.5 retina CCCCACACAC (5) 5.9 0.0059 P0.5 retina CACTTGGACC (2) 2 0.002 P0.5 retina CCAGAAAATA (2) 2 0.002 P2.5 retina GAAAAAAAAA (204) 86.2 0.0862 P2.5 retina CCAGAAAATA (2) 12.3 0.0123 P2.5 retina AAAGAGGGGA (6) 3.5 0.0035 P2.5 retina CAGGAGGCAT (4) 1.8 0.0018 P2.5 retina TTTGAAACTT (4) 1.8 0.0018 P4.5 retina GAAAAAAAAA (204) 51.5 0.0515 P4.5 retina ACAGTCTATG (4) 5.9 0.0059 P4.5 retina CCAGAAAATA (2) 4 0.004 P4.5 retina GGATGGCTTA (3) 4 0.004 P4.5 retina TTCCTGGTTG (4) 4 0.004 P6.5 retina GAAAAAAAAA (204) 40 0.04 P6.5 retina CCAGAAAATA (2) 11.7 0.0117 P6.5 retina ACAGTCTATG (4) 3.3 0.0033 P6.5 retina CCCCACACAC (5) 1.7 0.0017 P6.5 retina TAAAAGTCAG (3) 1.7 0.0017 P10.5 crx- retina CCAGAAAATA (2) 16.7 0.0167 P10.5 crx- retina GAAAAAAAAA (204) 16.7 0.0167 P10.5 crx- retina CCCCACACAC (5) 5.6 0.0056 P10.5 crx- retina ACAGTCTATG (4) 3.7 0.0037 P10.5 crx- retina TGCGGAGGGC (2) 3.7 0.0037 P10.5 crx- retina TAAAAGTCAG (3) 1.9 0.0019 P10.5 crx- retina TGATGTGTGA (6) 1.9 0.0019 P10.5 crx+ retina GAAAAAAAAA (204) 42.3 0.0423 P10.5 crx+ retina CCAGAAAATA (2) 17.3 0.0173 P10.5 crx+ retina ACAGTCTATG (4) 5.8 0.0058 P10.5 crx+ retina ATTCCCCCAC (2) 3.8 0.0038 P10.5 crx+ retina AAAGAGGGGA (6) 1.9 0.0019 P10.5 crx+ retina GCTATCGCCA (2) 1.9 0.0019 Adult retinal GAAAAAAAAA (204) 16.7 0.0167 Adult retinal CCAGAAAATA (2) 5.6 0.0056 Adult retinal ACAGTCTATG (4) 3.7 0.0037 Adult retinal TGCGGAGGGC (2) 3.7 0.0037 Adult retinal CCCCACACAC (5) 1.9 0.0019 Adult retinal GTGATGGCTT (2) 1.9 0.0019 Adult retinal TTCCTGGTTG (4) 1.9 0.0019 ONL GAAAAAAAAA (204) 24.9 0.0249 ONL TTCCTGGTTG (4) 7.7 0.0077 ONL CCAGAAAATA (2) 1.9 0.0019