Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.276325	Sod1	superoxide dismutase 1, soluble	16	16 61.0 cM	20655
Gene Ontology	activation of MAPK | antioxidant activity | copper, zinc superoxide dismutase activity | copper, zinc superoxide dismutase activity | copper, zinc superoxide dismutase activity | cytoplasm | DNA fragmentation | metal ion binding | mitochondrion | oxidoreductase activity | removal of superoxide radicals | response to oxidative stress | superoxide metabolism
Human Homolog	SOD1[superoxide dismutase 1, soluble (amyotrophic lateral sclerosis 1 (adult))]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 105 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AGAAACAAGA (3) 8.2 0.0082 P8 Cb GC CTTCCCCGGG (2) 4.9 0.0049 P8 Cb GC GGTTCCACGT (3) 1.6 0.0016 P8 Cb GC TAGCGCGCCC (35) 1.6 0.0016 P8 Cb GC TTGGAGACCT 1.6 0.0016 Cb medulloblastoma AGAAACAAGA (3) 30.1 0.0301 Cb medulloblastoma CTTCCCCGGG (2) 9.2 0.0092 Cb medulloblastoma AAAAAAAAGA (7) 6.9 0.0069 Cb medulloblastoma AGAAACCAAG (4) 2.3 0.0023 Cb medulloblastoma GACCACCATT 2.3 0.0023 P8 GC+1d culture AGAAACAAGA (3) 10.3 0.0103 P8 GC+1d culture AAAAAAAAGA (7) 2.3 0.0023 P8 GC+1d culture AGAAACCAAG (4) 2.3 0.0023 P8 GC+1d culture CTGGCCTTCA (5) 2.3 0.0023 P8 GC+1d culture ATATTTTCTG (5) 1.1 0.0011 P8 GC+1d culture TAGCGCGCCC (35) 1.1 0.0011 P8 GC+SHH+1d culture AGAAACAAGA (3) 23.4 0.0234 P8 GC+SHH+1d culture CTTCCCCGGG (2) 3.5 0.0035 P8 GC+SHH+1d culture AGAAACCAAG (4) 2.3 0.0023 P8 GC+SHH+1d culture GACCACCATT 2.3 0.0023 P8 GC+SHH+1d culture AAAAAAAAGA (7) 1.2 0.0012 P8 GC+SHH+1d culture GGGATGGGGG (4) 1.2 0.0012 P8 GC+SHH+1d culture TTGCCGCAGT (2) 1.2 0.0012 P8 GC+SHH+1d culture TTGGAGACCT 1.2 0.0012 3T3 fibroblasts CTTCCCCGGG (2) 52.6 0.0526 3T3 fibroblasts CTGGCCTTCA (5) 17.5 0.0175 3T3 fibroblasts AGAAACAAGA (3) 3.5 0.0035 3T3 fibroblasts CCTCTCTTCA (2) 3.5 0.0035 3T3 fibroblasts TAGCGCGCCC (35) 3.5 0.0035 E15 cortex CTTCCCCGGG (2) 24.7 0.0247 E15 cortex AGAAACAAGA (3) 9.9 0.0099 P1 cortex AGAAACAAGA (3) 22.7 0.0227 P1 cortex CTTCCCCGGG (2) 13.6 0.0136 P1 cortex AGAAACCAAG (4) 4.5 0.0045 Hypothalamus AGAAACAAGA (3) 23.5 0.0235 Hypothalamus CTTCCCCGGG (2) 7.2 0.0072 Hypothalamus TTGGAGACCT 3.6 0.0036 Hypothalamus CCTCTCTTCA (2) 1.8 0.0018 Hypothalamus CTGGCCTTCA (5) 1.8 0.0018 Hypothalamus GACCACCATT 1.8 0.0018 Hypothalamus TTGCCGCAGT (2) 1.8 0.0018 E12.5 retina CTTCCCCGGG (2) 33.8 0.0338 E12.5 retina AGAAACAAGA (3) 11.3 0.0113 E12.5 retina AGAAACCAAG (4) 3.8 0.0038 E12.5 retina CTGGCCTTCA (5) 3.8 0.0038 E12.5 retina GACCACCATT 3.8 0.0038 E12.5 retina AAAAAAAAGA (7) 1.9 0.0019 E12.5 retina GGTTCCACGT (3) 1.9 0.0019 E14.5 retina AGAAACAAGA (3) 10.9 0.0109 E14.5 retina AAAAAAAAGA (7) 3.6 0.0036 E14.5 retina CTGGCCTTCA (5) 3.6 0.0036 E14.5 retina CTTCCCCGGG (2) 3.6 0.0036 E14.5 retina ATATTTTCTG (5) 1.8 0.0018 E14.5 retina CCTCTCTTCA (2) 1.8 0.0018 E14.5 retina GACCACCATT 1.8 0.0018 E14.5 retina TTGCCGCAGT (2) 1.8 0.0018 E16.5 retina CTTCCCCGGG (2) 10.9 0.0109 E16.5 retina AGAAACAAGA (3) 9.1 0.0091 E16.5 retina CTGGCCTTCA (5) 3.6 0.0036 E16.5 retina GCGATGAAAG 3.6 0.0036 E16.5 retina ATATTTTCTG (5) 1.8 0.0018 E16.5 retina GACCACCATT 1.8 0.0018 E16.5 retina TTGCCGCAGT (2) 1.8 0.0018 E16.5 retina TTGGAGACCT 1.8 0.0018 E18.5 retina CTTCCCCGGG (2) 12.7 0.0127 E18.5 retina AGAAACAAGA (3) 10.9 0.0109 E18.5 retina CTGGCCTTCA (5) 1.8 0.0018 E18.5 retina GACCACCATT 1.8 0.0018 P0.5 retina CTTCCCCGGG (2) 19.6 0.0196 P0.5 retina AGAAACAAGA (3) 17.7 0.0177 P0.5 retina AAAAAAAAGA (7) 3.9 0.0039 P0.5 retina ATATTTTCTG (5) 2 0.002 P2.5 retina CTTCCCCGGG (2) 19.4 0.0194 P2.5 retina AGAAACAAGA (3) 17.6 0.0176 P2.5 retina AAAAAAAAGA (7) 3.5 0.0035 P2.5 retina CCTCTCTTCA (2) 1.8 0.0018 P2.5 retina GGGATGGGGG (4) 1.8 0.0018 P4.5 retina CTTCCCCGGG (2) 7.9 0.0079 P4.5 retina CTGGCCTTCA (5) 5.9 0.0059 P4.5 retina AGAAACAAGA (3) 4 0.004 P4.5 retina AGAAACCAAG (4) 2 0.002 P4.5 retina ATATTTTCTG (5) 2 0.002 P4.5 retina GGGATGGGGG (4) 2 0.002 P6.5 retina CTTCCCCGGG (2) 25 0.025 P6.5 retina AGAAACAAGA (3) 8.3 0.0083 P6.5 retina CTGGCCTTCA (5) 3.3 0.0033 P6.5 retina AAAAAAAAGA (7) 1.7 0.0017 P6.5 retina ATATTTTCTG (5) 1.7 0.0017 P6.5 retina GACCACCATT 1.7 0.0017 P10.5 crx- retina AGAAACAAGA (3) 18.6 0.0186 P10.5 crx- retina CTTCCCCGGG (2) 5.6 0.0056 P10.5 crx- retina ATATTTTCTG (5) 3.7 0.0037 P10.5 crx- retina AAAAAAAAGA (7) 1.9 0.0019 P10.5 crx- retina GCGATGAAAG 1.9 0.0019 P10.5 crx+ retina CTTCCCCGGG (2) 23.1 0.0231 P10.5 crx+ retina AGAAACAAGA (3) 5.8 0.0058 P10.5 crx+ retina CTGGCCTTCA (5) 5.8 0.0058 P10.5 crx+ retina AAAAAAAAGA (7) 1.9 0.0019 P10.5 crx+ retina GACCACCATT 1.9 0.0019 P10.5 crx+ retina GGTTCCACGT (3) 1.9 0.0019 Adult retinal CTTCCCCGGG (2) 7.4 0.0074 Adult retinal AGAAACAAGA (3) 5.6 0.0056 Adult retinal TTGCCGCAGT (2) 1.9 0.0019 ONL ATATTTTCTG (5) 5.7 0.0057 ONL AGAAACAAGA (3) 3.8 0.0038