Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.279361	Vcl	vinculin	14	14 2.5 cM	22330
Gene Ontology	actin binding | adherens junction | cell adhesion | costamere | cytoskeleton | focal adhesion | intercellular junction | lamellipodium biogenesis | metabolism | oxidoreductase activity | protein binding | regulation of cell migration | structural molecule activity
Human Homolog	VCL[vinculin]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 59 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGTTGCTGG (369) 68.5 0.0685 P8 Cb GC TTTGTTTGTT (6) 42.4 0.0424 P8 Cb GC GCTCTGCTGA (4) 1.6 0.0016 Cb medulloblastoma TGGTTGCTGG (369) 113.3 0.1133 Cb medulloblastoma TCCACCAGAT (7) 2.3 0.0023 Cb medulloblastoma TTTGTTTGTT (6) 2.3 0.0023 P8 GC+1d culture TGGTTGCTGG (369) 57.1 0.0571 P8 GC+1d culture TTTGTTTGTT (6) 9.1 0.0091 P8 GC+SHH+1d culture TGGTTGCTGG (369) 89 0.089 P8 GC+SHH+1d culture TTTGTTTGTT (6) 10.5 0.0105 P8 GC+SHH+1d culture AACCACATAG (2) 1.2 0.0012 3T3 fibroblasts TGGTTGCTGG (369) 220.8 0.2208 E15 cortex TGGTTGCTGG (369) 277.1 0.2771 E15 cortex CTTTGTCACT 4.9 0.0049 E15 cortex TCCACCAGAT (7) 4.9 0.0049 P1 cortex TGGTTGCTGG (369) 86.4 0.0864 Hypothalamus TGGTTGCTGG (369) 349.6 0.3496 Hypothalamus GCTCTGCTGA (4) 3.6 0.0036 Hypothalamus TGAAAGATGC (2) 1.8 0.0018 Hypothalamus TTTGTTTGTT (6) 1.8 0.0018 E12.5 retina TGGTTGCTGG (369) 157.7 0.1577 E12.5 retina AACCACATAG (2) 3.8 0.0038 E12.5 retina TTTGTTTGTT (6) 3.8 0.0038 E12.5 retina TGAAAGATGC (2) 1.9 0.0019 E14.5 retina TGGTTGCTGG (369) 936.5 0.9365 E14.5 retina AACCACATAG (2) 3.6 0.0036 E14.5 retina TGAAAGATGC (2) 1.8 0.0018 E14.5 retina TTTGTTTGTT (6) 1.8 0.0018 E16.5 retina TGGTTGCTGG (369) 767.9 0.7679 E16.5 retina TTTGTTTGTT (6) 7.2 0.0072 E16.5 retina TGAAAGATGC (2) 5.4 0.0054 E16.5 retina AACCACATAG (2) 3.6 0.0036 E18.5 retina TGGTTGCTGG (369) 252.8 0.2528 E18.5 retina TTTGTTTGTT (6) 5.5 0.0055 P0.5 retina TGGTTGCTGG (369) 190.4 0.1904 P0.5 retina AACCACATAG (2) 2 0.002 P0.5 retina TCCACCAGAT (7) 2 0.002 P2.5 retina TGGTTGCTGG (369) 165.4 0.1654 P2.5 retina TTTGTTTGTT (6) 7 0.007 P2.5 retina TCCACCAGAT (7) 1.8 0.0018 P4.5 retina TGGTTGCTGG (369) 150.6 0.1506 P4.5 retina TTTGTTTGTT (6) 4 0.004 P4.5 retina AACCACATAG (2) 2 0.002 P6.5 retina TGGTTGCTGG (369) 156.7 0.1567 P6.5 retina TTTGTTTGTT (6) 6.7 0.0067 P6.5 retina AACCACATAG (2) 3.3 0.0033 P6.5 retina CTTTGTCACT 1.7 0.0017 P10.5 crx- retina TGGTTGCTGG (369) 280.5 0.2805 P10.5 crx- retina TTTGTTTGTT (6) 5.6 0.0056 P10.5 crx+ retina TGGTTGCTGG (369) 101.9 0.1019 P10.5 crx+ retina AACCACATAG (2) 1.9 0.0019 P10.5 crx+ retina CTTTGTCACT 1.9 0.0019 P10.5 crx+ retina TTTGTTTGTT (6) 1.9 0.0019 Adult retinal TGGTTGCTGG (369) 214.8 0.2148 Adult retinal AACCACATAG (2) 7.4 0.0074 Adult retinal TCCACCAGAT (7) 5.6 0.0056 Adult retinal TTTGTTTGTT (6) 3.7 0.0037 ONL TGGTTGCTGG (369) 398.4 0.3984 ONL TTTGTTTGTT (6) 9.6 0.0096