Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.280968	Cbx3	chromobox homolog 3 (Drosophila HP1 gamma)	6	6 B2.3 (6 26.0 cM)	12417
Gene Ontology	chromatin | chromatin assembly/disassembly | chromatin binding | chromatin modification | nucleus | regulation of transcription, DNA-dependent
Human Homolog	CBX3[chromobox homolog 3 (HP1 gamma homolog, Drosophila)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 83 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CTTTTTCTTT (5) 9.8 0.0098 P8 Cb GC TTGTATTTCC (2) 6.5 0.0065 P8 Cb GC TACAACACTC (3) 4.9 0.0049 P8 Cb GC AAGTGTCCTC (2) 3.3 0.0033 P8 Cb GC GTGGATTTTC (7) 3.3 0.0033 P8 Cb GC GTATCAAATA (6) 1.6 0.0016 Cb medulloblastoma GTGGATTTTC (7) 13.9 0.0139 Cb medulloblastoma CTTTTTCTTT (5) 4.6 0.0046 Cb medulloblastoma AAGGTGGAAA (2) 2.3 0.0023 P8 GC+1d culture CTTTTTCTTT (5) 20.5 0.0205 P8 GC+1d culture TACAACACTC (3) 10.3 0.0103 P8 GC+1d culture TTGTATTTCC (2) 5.7 0.0057 P8 GC+1d culture AAGTGTCCTC (2) 1.1 0.0011 P8 GC+1d culture GTGGATTTTC (7) 1.1 0.0011 P8 GC+SHH+1d culture CTTTTTCTTT (5) 10.5 0.0105 P8 GC+SHH+1d culture TACAACACTC (3) 9.4 0.0094 P8 GC+SHH+1d culture TTGTATTTCC (2) 8.2 0.0082 P8 GC+SHH+1d culture AAGGTGGAAA (2) 1.2 0.0012 P8 GC+SHH+1d culture GTATCAAATA (6) 1.2 0.0012 P8 GC+SHH+1d culture GTGGATTTTC (7) 1.2 0.0012 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 3T3 fibroblasts CTTTTTCTTT (5) 3.5 0.0035 E15 cortex GTCATAGCTG (590) 4.9 0.0049 E15 cortex GTGGATTTTC (7) 4.9 0.0049 E15 cortex TACAACACTC (3) 4.9 0.0049 P1 cortex TACAACACTC (3) 40.9 0.0409 P1 cortex GTATCAAATA (6) 4.5 0.0045 Hypothalamus GTGGATTTTC (7) 3.6 0.0036 Hypothalamus TTGTATTTCC (2) 3.6 0.0036 Hypothalamus AAGGTGGAAA (2) 1.8 0.0018 Hypothalamus CTTTTTCTTT (5) 1.8 0.0018 Hypothalamus TACAACACTC (3) 1.8 0.0018 E12.5 retina CTTTTTCTTT (5) 9.4 0.0094 E12.5 retina AAGGTGGAAA (2) 5.6 0.0056 E12.5 retina TACAACACTC (3) 5.6 0.0056 E12.5 retina AAGTGTCCTC (2) 3.8 0.0038 E12.5 retina GTGGATTTTC (7) 3.8 0.0038 E12.5 retina TTGTATTTCC (2) 3.8 0.0038 E14.5 retina CTTTTTCTTT (5) 7.3 0.0073 E14.5 retina AAGTGTCCTC (2) 3.6 0.0036 E14.5 retina TACAACACTC (3) 3.6 0.0036 E16.5 retina CTTTTTCTTT (5) 14.5 0.0145 E16.5 retina TACAACACTC (3) 5.4 0.0054 E16.5 retina TTGTATTTCC (2) 1.8 0.0018 E18.5 retina TTGTATTTCC (2) 10.9 0.0109 E18.5 retina CTTTTTCTTT (5) 7.3 0.0073 E18.5 retina AAGTGTCCTC (2) 1.8 0.0018 E18.5 retina GTGGATTTTC (7) 1.8 0.0018 E18.5 retina TACAACACTC (3) 1.8 0.0018 P0.5 retina TACAACACTC (3) 9.8 0.0098 P0.5 retina TTGTATTTCC (2) 7.9 0.0079 P0.5 retina CTTTTTCTTT (5) 3.9 0.0039 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina AAGTGTCCTC (2) 2 0.002 P2.5 retina CTTTTTCTTT (5) 17.6 0.0176 P2.5 retina TTGTATTTCC (2) 10.6 0.0106 P2.5 retina AAGTGTCCTC (2) 3.5 0.0035 P2.5 retina TACAACACTC (3) 3.5 0.0035 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P2.5 retina GTGGATTTTC (7) 1.8 0.0018 P4.5 retina CTTTTTCTTT (5) 13.9 0.0139 P4.5 retina TACAACACTC (3) 13.9 0.0139 P4.5 retina TTGTATTTCC (2) 9.9 0.0099 P4.5 retina AAGGTGGAAA (2) 2 0.002 P4.5 retina GTCATAGCTG (590) 2 0.002 P6.5 retina TACAACACTC (3) 6.7 0.0067 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina GTGGATTTTC (7) 3.3 0.0033 P6.5 retina AAGTGTCCTC (2) 1.7 0.0017 P6.5 retina CTTTTTCTTT (5) 1.7 0.0017 P6.5 retina TTGTATTTCC (2) 1.7 0.0017 P10.5 crx- retina CTTTTTCTTT (5) 9.3 0.0093 P10.5 crx- retina TACAACACTC (3) 3.7 0.0037 P10.5 crx- retina AAGGTGGAAA (2) 1.9 0.0019 P10.5 crx- retina GTGGATTTTC (7) 1.9 0.0019 P10.5 crx+ retina CTTTTTCTTT (5) 3.8 0.0038 P10.5 crx+ retina TACAACACTC (3) 3.8 0.0038 P10.5 crx+ retina TTGTATTTCC (2) 1.9 0.0019 Adult retinal TACAACACTC (3) 7.4 0.0074 Adult retinal CTTTTTCTTT (5) 3.7 0.0037 Adult retinal GTCATAGCTG (590) 1.9 0.0019 ONL GTCATAGCTG (590) 5.7 0.0057 ONL CTTTTTCTTT (5) 3.8 0.0038