Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.281011	C78505	expressed sequence C78505	19		98146
Mm.281011	Slk	STE20-like kinase (yeast)	19		20874
Gene Ontology	ATP binding | DNA binding | kinase activity | nuclease activity | nucleotide-excision repair | protein amino acid phosphorylation | protein kinase activity | protein serine/threonine kinase activity | protein-tyrosine kinase activity | transferase activity
Human Homolog	SLK[STE20-like kinase (yeast)] | SLK[STE20-like kinase (yeast)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 81 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGATTGTCAA (2) 8.2 0.0082 P8 Cb GC AGTTAAATCC (6) 4.9 0.0049 P8 Cb GC GAATAAAAAA (7) 3.3 0.0033 P8 Cb GC AAAATCACCA (3) 1.6 0.0016 P8 Cb GC AACTCCTGCT (6) 1.6 0.0016 P8 Cb GC AATGAAAAGG (8) 1.6 0.0016 P8 Cb GC TGATCTTTCA (2) 1.6 0.0016 Cb medulloblastoma GGATTGTCAA (2) 9.2 0.0092 Cb medulloblastoma AGTTAAATCC (6) 6.9 0.0069 Cb medulloblastoma TTTAAAAAAA (34) 6.9 0.0069 Cb medulloblastoma GCTGCCTTCC (3) 2.3 0.0023 P8 GC+1d culture GGATTGTCAA (2) 6.8 0.0068 P8 GC+1d culture AGTTAAATCC (6) 2.3 0.0023 P8 GC+1d culture TATCTCTTCA (3) 1.1 0.0011 P8 GC+1d culture TTGGTGACGT (2) 1.1 0.0011 P8 GC+SHH+1d culture GGATTGTCAA (2) 10.5 0.0105 P8 GC+SHH+1d culture TTTAAAAAAA (34) 5.9 0.0059 P8 GC+SHH+1d culture AACTCCTGCT (6) 2.3 0.0023 P8 GC+SHH+1d culture AGTTAAATCC (6) 1.2 0.0012 3T3 fibroblasts GCTGCCTTCC (3) 3.5 0.0035 3T3 fibroblasts TTGGTGACGT (2) 3.5 0.0035 E15 cortex GCTGCCTTCC (3) 4.9 0.0049 P1 cortex AGTTAAATCC (6) 9.1 0.0091 P1 cortex AGAATGGAGA (9) 4.5 0.0045 P1 cortex GGATTGTCAA (2) 4.5 0.0045 Hypothalamus TTTAAAAAAA (34) 10.9 0.0109 Hypothalamus GGATTGTCAA (2) 5.4 0.0054 Hypothalamus AGTTAAATCC (6) 3.6 0.0036 Hypothalamus GCTGCCTTCC (3) 3.6 0.0036 Hypothalamus AGAATGGAGA (9) 1.8 0.0018 Hypothalamus TATCTCTTCA (3) 1.8 0.0018 E12.5 retina GGATTGTCAA (2) 5.6 0.0056 E12.5 retina TGATCTTTCA (2) 5.6 0.0056 E12.5 retina AATGAAAAGG (8) 1.9 0.0019 E12.5 retina GAATAAAAAA (7) 1.9 0.0019 E12.5 retina TATCTCTTCA (3) 1.9 0.0019 E12.5 retina TTTAAAAAAA (34) 1.9 0.0019 E14.5 retina TTTAAAAAAA (34) 9.1 0.0091 E14.5 retina GGATTGTCAA (2) 3.6 0.0036 E14.5 retina TTGGTGACGT (2) 3.6 0.0036 E14.5 retina AAAATCACCA (3) 1.8 0.0018 E14.5 retina AGAATGGGAG (3) 1.8 0.0018 E16.5 retina GCTGCCTTCC (3) 3.6 0.0036 E16.5 retina TTTAAAAAAA (34) 1.8 0.0018 E18.5 retina GGATTGTCAA (2) 10.9 0.0109 E18.5 retina TTTAAAAAAA (34) 10.9 0.0109 E18.5 retina AGTTAAATCC (6) 3.6 0.0036 E18.5 retina GAATAAAAAA (7) 1.8 0.0018 E18.5 retina TTTCTCTTCA (4) 1.8 0.0018 P0.5 retina GGATTGTCAA (2) 3.9 0.0039 P0.5 retina AGAATGGGAG (3) 2 0.002 P0.5 retina AGTTAAATCC (6) 2 0.002 P0.5 retina TTTAAAAAAA (34) 2 0.002 P2.5 retina GGATTGTCAA (2) 8.8 0.0088 P2.5 retina AATGAAAAGG (8) 3.5 0.0035 P2.5 retina TTTAAAAAAA (34) 1.8 0.0018 P4.5 retina GGATTGTCAA (2) 9.9 0.0099 P4.5 retina TTTAAAAAAA (34) 5.9 0.0059 P4.5 retina AGAATGGAGA (9) 2 0.002 P4.5 retina GCTGCCTTCC (3) 2 0.002 P4.5 retina TTTCTCTTCA (4) 2 0.002 P6.5 retina AGTTAAATCC (6) 6.7 0.0067 P6.5 retina GGATTGTCAA (2) 6.7 0.0067 P6.5 retina TTTAAAAAAA (34) 6.7 0.0067 P6.5 retina AATGAAAAGG (8) 1.7 0.0017 P6.5 retina GCTGCCTTCC (3) 1.7 0.0017 P10.5 crx- retina AGTTAAATCC (6) 3.7 0.0037 P10.5 crx- retina GGATTGTCAA (2) 3.7 0.0037 P10.5 crx- retina AGAATGGGAG (3) 1.9 0.0019 P10.5 crx+ retina GGATTGTCAA (2) 11.5 0.0115 P10.5 crx+ retina GCTGCCTTCC (3) 5.8 0.0058 P10.5 crx+ retina AGTTAAATCC (6) 1.9 0.0019 Adult retinal GGATTGTCAA (2) 5.6 0.0056 Adult retinal GCTGCCTTCC (3) 1.9 0.0019 Adult retinal TTTCTCTTCA (4) 1.9 0.0019 ONL GGATTGTCAA (2) 7.7 0.0077 ONL TTTAAAAAAA (34) 7.7 0.0077 ONL TATCTCTTCA (3) 3.8 0.0038 ONL AAAATCACCA (3) 1.9 0.0019 ONL AGTTAAATCC (6) 1.9 0.0019 ONL TGATCTTTCA (2) 1.9 0.0019