Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.28173	Mars	methionine-tRNA synthetase	10		216443
Gene Ontology	cytoplasm | methionine-tRNA ligase activity | methionyl-tRNA aminoacylation | nucleolus | rRNA transcription
Human Homolog	MARS[methionine-tRNA synthetase]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 97 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGTTGCTGG (369) 68.5 0.0685 P8 Cb GC GACAGTAATA (4) 8.2 0.0082 P8 Cb GC TCCAGTAAAG (3) 3.3 0.0033 P8 Cb GC CGTTGCTTCC (2) 1.6 0.0016 Cb medulloblastoma TGGTTGCTGG (369) 113.3 0.1133 Cb medulloblastoma GACAGTAATA (4) 6.9 0.0069 Cb medulloblastoma TCCAGTAAAG (3) 6.9 0.0069 P8 GC+1d culture TGGTTGCTGG (369) 57.1 0.0571 P8 GC+1d culture TCCAGTAAAG (3) 8 0.008 P8 GC+1d culture GACAGTAATA (4) 2.3 0.0023 P8 GC+1d culture CCAGCTCTGT (3) 1.1 0.0011 P8 GC+1d culture TCAGTAAAGT (4) 1.1 0.0011 P8 GC+1d culture TGGCTGGGAA (4) 1.1 0.0011 P8 GC+SHH+1d culture TGGTTGCTGG (369) 89 0.089 P8 GC+SHH+1d culture TCCAGTAAAG (3) 11.7 0.0117 P8 GC+SHH+1d culture GACAGTAATA (4) 9.4 0.0094 P8 GC+SHH+1d culture GAACCGATCA (5) 3.5 0.0035 P8 GC+SHH+1d culture TCAGTAAAGT (4) 2.3 0.0023 P8 GC+SHH+1d culture TGGCTGGGAA (4) 1.2 0.0012 3T3 fibroblasts TGGTTGCTGG (369) 220.8 0.2208 3T3 fibroblasts TCCAGTAAAG (3) 10.5 0.0105 3T3 fibroblasts CGTTGCTTCC (2) 3.5 0.0035 E15 cortex TGGTTGCTGG (369) 277.1 0.2771 E15 cortex CCAGCTCTGT (3) 4.9 0.0049 P1 cortex TGGTTGCTGG (369) 86.4 0.0864 P1 cortex GACAGTAATA (4) 13.6 0.0136 P1 cortex TCCAGTAAAG (3) 4.5 0.0045 Hypothalamus TGGTTGCTGG (369) 349.6 0.3496 Hypothalamus GACAGTAATA (4) 5.4 0.0054 Hypothalamus TCAGTAAAGT (4) 3.6 0.0036 Hypothalamus TCCAGTAAAG (3) 3.6 0.0036 Hypothalamus GAACCGATCA (5) 1.8 0.0018 Hypothalamus TGGCTGGGAA (4) 1.8 0.0018 E12.5 retina TGGTTGCTGG (369) 157.7 0.1577 E12.5 retina GACAGTAATA (4) 9.4 0.0094 E12.5 retina TCCAGTAAAG (3) 7.5 0.0075 E12.5 retina GAACCGATCA (5) 5.6 0.0056 E12.5 retina TCAGTAAAGT (4) 5.6 0.0056 E12.5 retina CCAGCTCTGT (3) 1.9 0.0019 E14.5 retina TGGTTGCTGG (369) 936.5 0.9365 E14.5 retina GACAGTAATA (4) 5.5 0.0055 E14.5 retina GAACCGATCA (5) 1.8 0.0018 E14.5 retina TCAGTAAAGT (4) 1.8 0.0018 E14.5 retina TCCAGTAAAG (3) 1.8 0.0018 E16.5 retina TGGTTGCTGG (369) 767.9 0.7679 E16.5 retina GACAGTAATA (4) 7.2 0.0072 E16.5 retina GAACCGATCA (5) 3.6 0.0036 E16.5 retina CGTTGCTTCC (2) 1.8 0.0018 E16.5 retina GCCAGTAATA (2) 1.8 0.0018 E16.5 retina TCCAGTAAAG (3) 1.8 0.0018 E18.5 retina TGGTTGCTGG (369) 252.8 0.2528 E18.5 retina GACAGTAATA (4) 18.2 0.0182 E18.5 retina TCCAGTAAAG (3) 5.5 0.0055 E18.5 retina GAACCGATCA (5) 1.8 0.0018 E18.5 retina TCAGTAAAGT (4) 1.8 0.0018 P0.5 retina TGGTTGCTGG (369) 190.4 0.1904 P0.5 retina TCCAGTAAAG (3) 2 0.002 P0.5 retina TGGCTGGGAA (4) 2 0.002 P2.5 retina TGGTTGCTGG (369) 165.4 0.1654 P2.5 retina GACAGTAATA (4) 17.6 0.0176 P2.5 retina TCCAGTAAAG (3) 7 0.007 P4.5 retina TGGTTGCTGG (369) 150.6 0.1506 P4.5 retina GACAGTAATA (4) 17.8 0.0178 P4.5 retina TCCAGTAAAG (3) 11.9 0.0119 P4.5 retina TCAGTAAAGT (4) 5.9 0.0059 P4.5 retina GAACCGATCA (5) 4 0.004 P4.5 retina CCAGCTCTGT (3) 2 0.002 P6.5 retina TGGTTGCTGG (369) 156.7 0.1567 P6.5 retina GACAGTAATA (4) 23.3 0.0233 P6.5 retina TCCAGTAAAG (3) 10 0.01 P6.5 retina GAACCGATCA (5) 5 0.005 P6.5 retina TCAGTAAAGT (4) 3.3 0.0033 P6.5 retina TCTCTTGGGG (4) 3.3 0.0033 P10.5 crx- retina TGGTTGCTGG (369) 280.5 0.2805 P10.5 crx- retina GACAGTAATA (4) 11.1 0.0111 P10.5 crx- retina TCCAGTAAAG (3) 5.6 0.0056 P10.5 crx- retina GAACCGATCA (5) 3.7 0.0037 P10.5 crx- retina GCCAGTAATA (2) 1.9 0.0019 P10.5 crx+ retina TGGTTGCTGG (369) 101.9 0.1019 P10.5 crx+ retina TCCAGTAAAG (3) 9.6 0.0096 P10.5 crx+ retina GACAGTAATA (4) 7.7 0.0077 P10.5 crx+ retina CGTTGCTTCC (2) 1.9 0.0019 P10.5 crx+ retina GAACCGATCA (5) 1.9 0.0019 P10.5 crx+ retina TCAGTAAAGT (4) 1.9 0.0019 Adult retinal TGGTTGCTGG (369) 214.8 0.2148 Adult retinal AAGACACCAA (6) 14.8 0.0148 Adult retinal GACAGTAATA (4) 14.8 0.0148 Adult retinal TCCAGTAAAG (3) 9.3 0.0093 Adult retinal TCAGTAAAGT (4) 5.6 0.0056 ONL TGGTTGCTGG (369) 398.4 0.3984 ONL TCCAGTAAAG (3) 9.6 0.0096 ONL AAGACACCAA (6) 3.8 0.0038 ONL GACAGTAATA (4) 3.8 0.0038 ONL TCAGTAAAGT (4) 3.8 0.0038 ONL GAACCGATCA (5) 1.9 0.0019 ONL GCCAGTAATA (2) 1.9 0.0019 ONL TCTCTTGGGG (4) 1.9 0.0019