Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.28222	Ddx39	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	8		68278
Gene Ontology	ATP binding | ATP dependent helicase activity | ATP dependent RNA helicase activity | ATPase activity | helicase activity | hydrolase activity | nucleic acid binding | nucleus | RNA binding
Human Homolog	DDX39[DEAD (Asp-Glu-Ala-Asp) box polypeptide 39]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 136 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCCACTCTCT 13.1 0.0131 P8 Cb GC CCAGAGGACT (2) 8.2 0.0082 P8 Cb GC TGGCCCTGGC (2) 3.3 0.0033 P8 Cb GC GCCATTTTCT (5) 1.6 0.0016 P8 Cb GC TAGCCCTGGC (6) 1.6 0.0016 P8 Cb GC TTGTTGTTGG (3) 1.6 0.0016 Cb medulloblastoma CACTTCAAAC (3) 6.9 0.0069 Cb medulloblastoma GAAAGGAGGC 4.6 0.0046 Cb medulloblastoma GCCACTCTCT 4.6 0.0046 Cb medulloblastoma GCCATTTTCT (5) 4.6 0.0046 Cb medulloblastoma GGGGCCACTT (4) 4.6 0.0046 Cb medulloblastoma GCAGAACAGG (5) 2.3 0.0023 Cb medulloblastoma GCCCTGGCCC (2) 2.3 0.0023 Cb medulloblastoma GGGCTGCAGC (5) 2.3 0.0023 P8 GC+1d culture CCAGAGGACT (2) 12.6 0.0126 P8 GC+1d culture GCCACTCTCT 6.8 0.0068 P8 GC+1d culture GCCCTGGCCC (2) 1.1 0.0011 P8 GC+1d culture TGGCCCTGGC (2) 1.1 0.0011 P8 GC+SHH+1d culture CCAGAGGACT (2) 18.7 0.0187 P8 GC+SHH+1d culture GCCACTCTCT 9.4 0.0094 P8 GC+SHH+1d culture TGGCCCTGGC (2) 3.5 0.0035 P8 GC+SHH+1d culture TAGCCCTGGC (6) 2.3 0.0023 P8 GC+SHH+1d culture TTGTTGTTGG (3) 2.3 0.0023 P8 GC+SHH+1d culture GCAGAACAGG (5) 1.2 0.0012 P8 GC+SHH+1d culture GCCCTGGCCC (2) 1.2 0.0012 P8 GC+SHH+1d culture GGGCTGCAGC (5) 1.2 0.0012 3T3 fibroblasts CCAGAGGACT (2) 17.5 0.0175 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 3T3 fibroblasts GCAGAACAGG (5) 3.5 0.0035 3T3 fibroblasts GCCACTCTCT 3.5 0.0035 3T3 fibroblasts GCCCTGGCCC (2) 3.5 0.0035 3T3 fibroblasts GGGGCCACTT (4) 3.5 0.0035 3T3 fibroblasts TAGCCCTGGC (6) 3.5 0.0035 E15 cortex CCAGAGGACT (2) 29.7 0.0297 E15 cortex GGGGCCACTT (4) 9.9 0.0099 E15 cortex CACTTCAAAC (3) 4.9 0.0049 E15 cortex GCCCTGGCCC (2) 4.9 0.0049 E15 cortex GTCATAGCTG (590) 4.9 0.0049 E15 cortex TGGCCCTGGC (2) 4.9 0.0049 P1 cortex CCAGAGGACT (2) 27.3 0.0273 P1 cortex GCCCTGGCCC (2) 4.5 0.0045 P1 cortex GGGGCCACTT (4) 4.5 0.0045 Hypothalamus GGGGCCACTT (4) 7.2 0.0072 Hypothalamus CCAGAGGACT (2) 5.4 0.0054 Hypothalamus TTGTTGTTGG (3) 3.6 0.0036 Hypothalamus GCAGAACAGG (5) 1.8 0.0018 Hypothalamus GCCACTCTCT 1.8 0.0018 Hypothalamus GCCATTTTCT (5) 1.8 0.0018 Hypothalamus GGGCTGCAGC (5) 1.8 0.0018 Hypothalamus TGGCCCTGGC (2) 1.8 0.0018 E12.5 retina CCAGAGGACT (2) 16.9 0.0169 E12.5 retina GCCACTCTCT 11.3 0.0113 E12.5 retina TTGTTGTTGG (3) 3.8 0.0038 E12.5 retina GCAGAACAGG (5) 1.9 0.0019 E12.5 retina TAGCCCTGGC (6) 1.9 0.0019 E12.5 retina TGGCCCTGGC (2) 1.9 0.0019 E14.5 retina CCAGAGGACT (2) 10.9 0.0109 E14.5 retina GCCACTCTCT 7.3 0.0073 E14.5 retina GAAAGGAGGC 1.8 0.0018 E14.5 retina GCCCAGGAAG (8) 1.8 0.0018 E14.5 retina TAGCCCTGGC (6) 1.8 0.0018 E14.5 retina TGGCCCTGGC (2) 1.8 0.0018 E16.5 retina CCAGAGGACT (2) 25.4 0.0254 E16.5 retina GCCACTCTCT 23.5 0.0235 E16.5 retina TGGCCCTGGC (2) 5.4 0.0054 E16.5 retina GCAGAACAGG (5) 3.6 0.0036 E16.5 retina GCCCAGGAAG (8) 3.6 0.0036 E16.5 retina GCCTGGAGGA (3) 3.6 0.0036 E16.5 retina GAAAGGAGGC 1.8 0.0018 E16.5 retina TAGCCCTGGC (6) 1.8 0.0018 E18.5 retina GCCACTCTCT 9.1 0.0091 E18.5 retina CCAGAGGACT (2) 5.5 0.0055 E18.5 retina CACTTCAAAC (3) 1.8 0.0018 E18.5 retina GCAGAACAGG (5) 1.8 0.0018 E18.5 retina GGGGCCACTT (4) 1.8 0.0018 E18.5 retina TGGCCCTGGC (2) 1.8 0.0018 E18.5 retina TTGTTGTTGG (3) 1.8 0.0018 P0.5 retina CCAGAGGACT (2) 58.9 0.0589 P0.5 retina GCCACTCTCT 15.7 0.0157 P0.5 retina GGGGCCACTT (4) 3.9 0.0039 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina GCCTGGAGGA (3) 2 0.002 P0.5 retina TAGCCCTGGC (6) 2 0.002 P0.5 retina TGGCCCTGGC (2) 2 0.002 P2.5 retina CCAGAGGACT (2) 10.6 0.0106 P2.5 retina GCCACTCTCT 3.5 0.0035 P2.5 retina TGGCCCTGGC (2) 3.5 0.0035 P2.5 retina GGGGCCACTT (4) 1.8 0.0018 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P2.5 retina TTGTTGTTGG (3) 1.8 0.0018 P4.5 retina CCAGAGGACT (2) 13.9 0.0139 P4.5 retina GCCACTCTCT 9.9 0.0099 P4.5 retina GGGGCCACTT (4) 4 0.004 P4.5 retina GAAAGGAGGC 2 0.002 P4.5 retina GCAGAACAGG (5) 2 0.002 P4.5 retina GGGCTGCAGC (5) 2 0.002 P4.5 retina GTCATAGCTG (590) 2 0.002 P4.5 retina TAGCCCTGGC (6) 2 0.002 P4.5 retina TGGCCCTGGC (2) 2 0.002 P6.5 retina CCAGAGGACT (2) 10 0.01 P6.5 retina CACTTCAAAC (3) 6.7 0.0067 P6.5 retina GCCACTCTCT 5 0.005 P6.5 retina GCAGAACAGG (5) 3.3 0.0033 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina TGGCCCTGGC (2) 3.3 0.0033 P6.5 retina GCCATTTTCT (5) 1.7 0.0017 P6.5 retina TTGTTGTTGG (3) 1.7 0.0017 P10.5 crx- retina CCAGAGGACT (2) 13 0.013 P10.5 crx- retina GCCACTCTCT 13 0.013 P10.5 crx- retina TGGCCCTGGC (2) 9.3 0.0093 P10.5 crx- retina GGGGCCACTT (4) 7.4 0.0074 P10.5 crx- retina CACTTCAAAC (3) 3.7 0.0037 P10.5 crx- retina GAAAGGAGGC 3.7 0.0037 P10.5 crx- retina TAGCCCTGGC (6) 3.7 0.0037 P10.5 crx- retina GCCATTTTCT (5) 1.9 0.0019 P10.5 crx+ retina GCCATTTTCT (5) 3.8 0.0038 P10.5 crx+ retina GGGGCCACTT (4) 3.8 0.0038 P10.5 crx+ retina CACTTCAAAC (3) 1.9 0.0019 P10.5 crx+ retina GCCACTCTCT 1.9 0.0019 P10.5 crx+ retina GGGCTGCAGC (5) 1.9 0.0019 P10.5 crx+ retina TAGCCCTGGC (6) 1.9 0.0019 Adult retinal CCAGAGGACT (2) 20.4 0.0204 Adult retinal GGGGCCACTT (4) 11.1 0.0111 Adult retinal TTGTTGTTGG (3) 5.6 0.0056 Adult retinal GCCACTCTCT 3.7 0.0037 Adult retinal CACTTCAAAC (3) 1.9 0.0019 Adult retinal GAAAGGAGGC 1.9 0.0019 Adult retinal GCAGAACAGG (5) 1.9 0.0019 Adult retinal GCCATTTTCT (5) 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 Adult retinal TGGCCCTGGC (2) 1.9 0.0019 ONL CCAGAGGACT (2) 5.7 0.0057 ONL GTCATAGCTG (590) 5.7 0.0057 ONL GCAGAACAGG (5) 3.8 0.0038 ONL GGGGCCACTT (4) 1.9 0.0019 ONL TAGCCCTGGC (6) 1.9 0.0019