Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.28375	Sec61a1	Sec61 alpha 1 subunit (S. cerevisiae)	6		53421
Gene Ontology	endoplasmic reticulum | integral to membrane | membrane | protein secretion | protein targeting | protein translocase activity | protein transport | transport
Human Homolog	SEC61A1[Sec61 alpha 1 subunit (S. cerevisiae)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 97 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ACAAATAAAC (5) 24.5 0.0245 P8 Cb GC AGGAGTCAGG (3) 4.9 0.0049 P8 Cb GC CCCAGCTCTT (3) 3.3 0.0033 P8 Cb GC TAATTTTTTA (3) 3.3 0.0033 Cb medulloblastoma ACAAATAAAC (5) 18.5 0.0185 Cb medulloblastoma AGGAGTCAGG (3) 2.3 0.0023 Cb medulloblastoma GACAAAATAA (7) 2.3 0.0023 Cb medulloblastoma TGGCAAAAAA (5) 2.3 0.0023 P8 GC+1d culture ACAAATAAAC (5) 19.4 0.0194 P8 GC+1d culture TAATTTTTTA (3) 9.1 0.0091 P8 GC+1d culture GGATACTTGA (2) 3.4 0.0034 P8 GC+1d culture CTGGAGACTG (4) 2.3 0.0023 P8 GC+1d culture CTACTGTGGC (2) 1.1 0.0011 P8 GC+SHH+1d culture ACAAATAAAC (5) 38.6 0.0386 P8 GC+SHH+1d culture TGGCAAAAAA (5) 5.9 0.0059 P8 GC+SHH+1d culture CTGGGCTCCT (9) 3.5 0.0035 P8 GC+SHH+1d culture AGGAGTCAGG (3) 2.3 0.0023 P8 GC+SHH+1d culture GACAAAATAA (7) 2.3 0.0023 P8 GC+SHH+1d culture GGATACTTGA (2) 2.3 0.0023 P8 GC+SHH+1d culture ACAAATAAGC (2) 1.2 0.0012 P8 GC+SHH+1d culture CCCAGCTCTT (3) 1.2 0.0012 P8 GC+SHH+1d culture CTACTGTGGC (2) 1.2 0.0012 P8 GC+SHH+1d culture CTGGAGACTG (4) 1.2 0.0012 P8 GC+SHH+1d culture TAATTTTTAT (2) 1.2 0.0012 3T3 fibroblasts CCCAGCTCTT (3) 3.5 0.0035 3T3 fibroblasts CTGGGCTCCT (9) 3.5 0.0035 3T3 fibroblasts TAATTTTTTA (3) 3.5 0.0035 E15 cortex ACAAATAAAC (5) 4.9 0.0049 P1 cortex ACAAATAAAC (5) 9.1 0.0091 P1 cortex AAGCCAAACA 4.5 0.0045 P1 cortex CTGGAGACTG (4) 4.5 0.0045 P1 cortex GAGACTGTCT (2) 4.5 0.0045 Hypothalamus ACAAATAAAC (5) 7.2 0.0072 Hypothalamus GGATACTTGA (2) 5.4 0.0054 Hypothalamus AAGCCAAACA 1.8 0.0018 Hypothalamus TGGCAAAAAA (5) 1.8 0.0018 Hypothalamus TTTTCACTGT (4) 1.8 0.0018 E12.5 retina ACAAATAAAC (5) 31.9 0.0319 E12.5 retina GGATACTTGA (2) 5.6 0.0056 E12.5 retina CTGGAGACTG (4) 3.8 0.0038 E12.5 retina CTGGGCTCCT (9) 1.9 0.0019 E12.5 retina GAGACTGTCT (2) 1.9 0.0019 E12.5 retina TAATTTTTTA (3) 1.9 0.0019 E14.5 retina ACAAATAAAC (5) 29.2 0.0292 E14.5 retina TAATTTTTTA (3) 3.6 0.0036 E14.5 retina CTGGAGACTG (4) 1.8 0.0018 E14.5 retina GCCGGTGGGC (3) 1.8 0.0018 E14.5 retina TAATTTTTAT (2) 1.8 0.0018 E14.5 retina TTTTCACTGT (4) 1.8 0.0018 E16.5 retina ACAAATAAAC (5) 30.8 0.0308 E16.5 retina CTGGAGACTG (4) 3.6 0.0036 E16.5 retina TGGCAAAAAA (5) 3.6 0.0036 E16.5 retina ACAAATAAGC (2) 1.8 0.0018 E16.5 retina CTGGGCTCCT (9) 1.8 0.0018 E16.5 retina GAGACTGTCT (2) 1.8 0.0018 E16.5 retina TAATTTTTTA (3) 1.8 0.0018 E18.5 retina ACAAATAAAC (5) 50.9 0.0509 E18.5 retina TGGCAAAAAA (5) 5.5 0.0055 E18.5 retina CTACTGTGGC (2) 1.8 0.0018 E18.5 retina GAGACTGTCT (2) 1.8 0.0018 E18.5 retina TAATTTTTTA (3) 1.8 0.0018 E18.5 retina TTTTCACTGT (4) 1.8 0.0018 P0.5 retina ACAAATAAAC (5) 13.7 0.0137 P0.5 retina GGATACTTGA (2) 7.9 0.0079 P0.5 retina CTGGAGACTG (4) 2 0.002 P0.5 retina CTGGGCTCCT (9) 2 0.002 P0.5 retina TGGCAAAAAA (5) 2 0.002 P2.5 retina ACAAATAAAC (5) 21.1 0.0211 P2.5 retina CTGGGCTCCT (9) 1.8 0.0018 P2.5 retina GCCGGTGGGC (3) 1.8 0.0018 P2.5 retina TGGCAAAAAA (5) 1.8 0.0018 P2.5 retina TTTTCACTGT (4) 1.8 0.0018 P4.5 retina ACAAATAAAC (5) 31.7 0.0317 P4.5 retina GGATACTTGA (2) 4 0.004 P4.5 retina TGGCAAAAAA (5) 4 0.004 P4.5 retina CTACTGTGGC (2) 2 0.002 P4.5 retina TAATTTTTAT (2) 2 0.002 P6.5 retina ACAAATAAAC (5) 30 0.03 P6.5 retina CTGGAGACTG (4) 5 0.005 P6.5 retina GGATACTTGA (2) 3.3 0.0033 P6.5 retina GCCGGTGGGC (3) 1.7 0.0017 P6.5 retina TAATTTTTTA (3) 1.7 0.0017 P10.5 crx- retina ACAAATAAAC (5) 9.3 0.0093 P10.5 crx- retina CTGGAGACTG (4) 3.7 0.0037 P10.5 crx- retina TAATTTTTAT (2) 1.9 0.0019 P10.5 crx- retina TTTTCACTGT (4) 1.9 0.0019 P10.5 crx+ retina ACAAATAAAC (5) 21.1 0.0211 P10.5 crx+ retina ACAAATAAGC (2) 1.9 0.0019 P10.5 crx+ retina GGATACTTGA (2) 1.9 0.0019 Adult retinal AAGCCAAACA 1.9 0.0019 Adult retinal ACAAATAAAC (5) 1.9 0.0019 Adult retinal CCCAGCTCTT (3) 1.9 0.0019 Adult retinal CTGGGCTCCT (9) 1.9 0.0019 ONL TTTTCACTGT (4) 3.8 0.0038 ONL ACAAATAAAC (5) 1.9 0.0019 ONL CCCAGCTCTT (3) 1.9 0.0019 ONL TGGCAAAAAA (5) 1.9 0.0019