Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.283802	H2afy	H2A histone family, member Y	13		26914
Gene Ontology	Barr body | centrosome | chromatin binding | chromosome | chromosome organization and biogenesis (sensu Eukarya) | condensed chromosome | DNA binding | dosage compensation | nucleosome | nucleosome assembly | nucleus | nucleus
Human Homolog	H2AFY[H2A histone family, member Y]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 138 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CGGTGTCCCC 22.8 0.0228 P8 Cb GC GCTGCTGTCT (4) 8.2 0.0082 P8 Cb GC AGTGCACACA (4) 4.9 0.0049 P8 Cb GC TTTTTTTTTT (433) 4.9 0.0049 P8 Cb GC CTGGAATTTG (3) 3.3 0.0033 P8 Cb GC GCTGCTGTCC (6) 3.3 0.0033 P8 Cb GC GTTTTGTAAA (5) 3.3 0.0033 P8 Cb GC TCGAGCCGCG 3.3 0.0033 Cb medulloblastoma GCTGCTGTCT (4) 6.9 0.0069 Cb medulloblastoma GTTTTGTAAA (5) 6.9 0.0069 Cb medulloblastoma GCCCTCAGGA (3) 2.3 0.0023 Cb medulloblastoma GCTGACACAG (3) 2.3 0.0023 Cb medulloblastoma GCTGCTGTCC (6) 2.3 0.0023 Cb medulloblastoma GGAATAAAAG (7) 2.3 0.0023 Cb medulloblastoma GTAAAAAGAA (3) 2.3 0.0023 Cb medulloblastoma TTTTTTTTTT (433) 2.3 0.0023 P8 GC+1d culture GCTGCTGTCT (4) 16 0.016 P8 GC+1d culture TTTTTTTTTT (433) 13.7 0.0137 P8 GC+1d culture CGGTGTCCCC 9.1 0.0091 P8 GC+1d culture GTTTTGTAAA (5) 8 0.008 P8 GC+1d culture CTGGAATTTG (3) 1.1 0.0011 P8 GC+1d culture GCCCTCAGGA (3) 1.1 0.0011 P8 GC+SHH+1d culture GCTGCTGTCT (4) 14.1 0.0141 P8 GC+SHH+1d culture CGGTGTCCCC 11.7 0.0117 P8 GC+SHH+1d culture GTTTTGTAAA (5) 5.9 0.0059 P8 GC+SHH+1d culture TTTTTTTTTT (433) 5.9 0.0059 P8 GC+SHH+1d culture CTGGAATTTG (3) 3.5 0.0035 P8 GC+SHH+1d culture GCCTGCACTA (2) 1.2 0.0012 P8 GC+SHH+1d culture GTAAAAAGAA (3) 1.2 0.0012 P8 GC+SHH+1d culture TGCTGGCTCT (4) 1.2 0.0012 3T3 fibroblasts CTGGAATTTG (3) 7 0.007 3T3 fibroblasts CGGTGTCCCC 3.5 0.0035 3T3 fibroblasts CTGAGCCTGA (7) 3.5 0.0035 3T3 fibroblasts GCTGCTGTCT (4) 3.5 0.0035 3T3 fibroblasts GTTTTGTAAA (5) 3.5 0.0035 E15 cortex CGGTGTCCCC 34.6 0.0346 E15 cortex AGTGCACACA (4) 4.9 0.0049 E15 cortex CTGGAATTTG (3) 4.9 0.0049 E15 cortex GCCTGCCTGC (9) 4.9 0.0049 E15 cortex TTTTTTTTTT (433) 4.9 0.0049 P1 cortex CGGTGTCCCC 4.5 0.0045 P1 cortex GCCCTCAGGA (3) 4.5 0.0045 P1 cortex GCCTGCCTGC (9) 4.5 0.0045 P1 cortex GCTGCTGTCT (4) 4.5 0.0045 P1 cortex TTTTTTTTTT (433) 4.5 0.0045 Hypothalamus GCTGCTGTCT (4) 21.7 0.0217 Hypothalamus GTTTTGTAAA (5) 10.9 0.0109 Hypothalamus TTTTTTTTTT (433) 7.2 0.0072 Hypothalamus CGGTGTCCCC 3.6 0.0036 Hypothalamus CTGAGCCTGA (7) 1.8 0.0018 Hypothalamus GCCCTCAGGA (3) 1.8 0.0018 Hypothalamus GCTGCTGTCC (6) 1.8 0.0018 Hypothalamus GGAATAAAAG (7) 1.8 0.0018 Hypothalamus TGCATACATA (14) 1.8 0.0018 E12.5 retina CGGTGTCCCC 28.2 0.0282 E12.5 retina TTTTTTTTTT (433) 7.5 0.0075 E12.5 retina GCTGCTGTCT (4) 3.8 0.0038 E12.5 retina GTTTTGTAAA (5) 3.8 0.0038 E12.5 retina AAGTACACAG (3) 1.9 0.0019 E12.5 retina GAGTGCCGTT 1.9 0.0019 E14.5 retina TTTTTTTTTT (433) 23.7 0.0237 E14.5 retina CGGTGTCCCC 14.6 0.0146 E14.5 retina GTTTTGTAAA (5) 14.6 0.0146 E14.5 retina GCCTGCACTA (2) 3.6 0.0036 E14.5 retina AAGTACACAG (3) 1.8 0.0018 E14.5 retina CTGGAATTTG (3) 1.8 0.0018 E14.5 retina TCGAGCCGCG 1.8 0.0018 E16.5 retina GCTGCTGTCT (4) 14.5 0.0145 E16.5 retina GTTTTGTAAA (5) 12.7 0.0127 E16.5 retina CGGTGTCCCC 9.1 0.0091 E16.5 retina GCCTGCCTGC (9) 5.4 0.0054 E16.5 retina TTTTTTTTTT (433) 5.4 0.0054 E16.5 retina GCCTGCACTA (2) 3.6 0.0036 E16.5 retina AAGTACACAG (3) 1.8 0.0018 E16.5 retina GCTGACACAG (3) 1.8 0.0018 E16.5 retina GCTGCTGTCC (6) 1.8 0.0018 E18.5 retina CGGTGTCCCC 20 0.02 E18.5 retina GCTGCTGTCT (4) 10.9 0.0109 E18.5 retina TTTTTTTTTT (433) 10.9 0.0109 E18.5 retina GTTTTGTAAA (5) 5.5 0.0055 E18.5 retina GCTGCTGTCC (6) 3.6 0.0036 E18.5 retina CTGGAATTTG (3) 1.8 0.0018 E18.5 retina GCTGACACAG (3) 1.8 0.0018 E18.5 retina GTAAAAAGAA (3) 1.8 0.0018 E18.5 retina TGCATACATA (14) 1.8 0.0018 E18.5 retina TGCTGGCTCT (4) 1.8 0.0018 P0.5 retina GCTGCTGTCT (4) 13.7 0.0137 P0.5 retina CGGTGTCCCC 9.8 0.0098 P0.5 retina TTTTTTTTTT (433) 9.8 0.0098 P0.5 retina CTGGAATTTG (3) 3.9 0.0039 P0.5 retina GTTTTGTAAA (5) 3.9 0.0039 P0.5 retina CTGAGCCTGA (7) 2 0.002 P0.5 retina GCCCTCAGGA (3) 2 0.002 P0.5 retina GCCTGCACTA (2) 2 0.002 P0.5 retina GGAATAAAAG (7) 2 0.002 P0.5 retina TGCATACATA (14) 2 0.002 P0.5 retina TGCTGGCTCT (4) 2 0.002 P2.5 retina CGGTGTCCCC 19.4 0.0194 P2.5 retina GCTGCTGTCT (4) 8.8 0.0088 P2.5 retina TTTTTTTTTT (433) 7 0.007 P2.5 retina CAGGTGTCCC (3) 3.5 0.0035 P2.5 retina GCCTGCACTA (2) 3.5 0.0035 P2.5 retina GTTTTGTAAA (5) 3.5 0.0035 P2.5 retina TGCATACATA (14) 3.5 0.0035 P2.5 retina GCCTGCCTGC (9) 1.8 0.0018 P4.5 retina CGGTGTCCCC 15.9 0.0159 P4.5 retina GTTTTGTAAA (5) 13.9 0.0139 P4.5 retina GCTGCTGTCT (4) 11.9 0.0119 P4.5 retina TTTTTTTTTT (433) 9.9 0.0099 P4.5 retina CTGGAATTTG (3) 2 0.002 P4.5 retina TGCATACATA (14) 2 0.002 P6.5 retina CGGTGTCCCC 11.7 0.0117 P6.5 retina GCTGCTGTCT (4) 11.7 0.0117 P6.5 retina TTTTTTTTTT (433) 8.3 0.0083 P6.5 retina GAGTGCCGTT 3.3 0.0033 P6.5 retina GTTTTGTAAA (5) 3.3 0.0033 P6.5 retina GCCTGCACTA (2) 1.7 0.0017 P6.5 retina TGCATACATA (14) 1.7 0.0017 P10.5 crx- retina GCTGCTGTCT (4) 18.6 0.0186 P10.5 crx- retina GTTTTGTAAA (5) 9.3 0.0093 P10.5 crx- retina GCTGCTGTCC (6) 1.9 0.0019 P10.5 crx+ retina GCTGCTGTCT (4) 23.1 0.0231 P10.5 crx+ retina CGGTGTCCCC 13.5 0.0135 P10.5 crx+ retina TTTTTTTTTT (433) 3.8 0.0038 P10.5 crx+ retina GTAAAAAGAA (3) 1.9 0.0019 P10.5 crx+ retina TGCATACATA (14) 1.9 0.0019 Adult retinal CGGTGTCCCC 9.3 0.0093 Adult retinal TTTTTTTTTT (433) 7.4 0.0074 Adult retinal CTGGAATTTG (3) 3.7 0.0037 Adult retinal AAGTACACAG (3) 1.9 0.0019 Adult retinal GCCTGCCTGC (9) 1.9 0.0019 Adult retinal GCTGACACAG (3) 1.9 0.0019 Adult retinal GCTGCTGTCT (4) 1.9 0.0019 ONL GCTGCTGTCT (4) 9.6 0.0096 ONL TTTTTTTTTT (433) 3.8 0.0038 ONL CAGGTGTCCC (3) 1.9 0.0019 ONL CGGTGTCCCC 1.9 0.0019 ONL GTTTTGTAAA (5) 1.9 0.0019