Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.28424	Sox12	SRY-box containing gene 12	2		20667
Gene Ontology	chromatin | DNA binding | nucleus | regulation of transcription, DNA-dependent | transcription factor activity | transcription factor complex
Human Homolog	SOX12[SRY (sex determining region Y)-box 12]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 83 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGAGTGAAGA 8.2 0.0082 P8 Cb GC ACGTTTTCCG 4.9 0.0049 P8 Cb GC GCACTGCATT 4.9 0.0049 P8 Cb GC AGGAGTGAAG (2) 3.3 0.0033 P8 Cb GC CCCAACACTG (5) 1.6 0.0016 P8 Cb GC GGGGGGAGGG (17) 1.6 0.0016 Cb medulloblastoma GCACTGCATT 4.6 0.0046 Cb medulloblastoma GCGGACTACC (3) 2.3 0.0023 P8 GC+1d culture TGAGTGAAGA 8 0.008 P8 GC+1d culture GCACTGCATT 4.6 0.0046 P8 GC+1d culture ACGTTTTCCG 1.1 0.0011 P8 GC+1d culture AGGAGTGAAG (2) 1.1 0.0011 P8 GC+1d culture CCCAACACTG (5) 1.1 0.0011 P8 GC+SHH+1d culture TGAGTGAAGA 10.5 0.0105 P8 GC+SHH+1d culture GCACTGCATT 4.7 0.0047 P8 GC+SHH+1d culture CCCAACACTG (5) 1.2 0.0012 P8 GC+SHH+1d culture GCGGACTACC (3) 1.2 0.0012 3T3 fibroblasts AGGAGTGAAG (2) 7 0.007 3T3 fibroblasts TGAGTGAAGA 7 0.007 E15 cortex TGAGTGAAGA 14.8 0.0148 E15 cortex ACGTTTTCCG 9.9 0.0099 E15 cortex TCTAAACAAA (2) 4.9 0.0049 P1 cortex ACGTTTTCCG 9.1 0.0091 P1 cortex TCTAAACAAA (2) 9.1 0.0091 P1 cortex CTTGATGCTT (2) 4.5 0.0045 P1 cortex TGAGTGAAGA 4.5 0.0045 Hypothalamus CCCAACACTG (5) 3.6 0.0036 Hypothalamus CTTGATGCTT (2) 3.6 0.0036 Hypothalamus ACGTTTTCCG 1.8 0.0018 E12.5 retina TGAGTGAAGA 9.4 0.0094 E12.5 retina AGGAGTGAAG (2) 1.9 0.0019 E14.5 retina AGGAGTGAAG (2) 3.6 0.0036 E14.5 retina TGAGTGAAGA 3.6 0.0036 E14.5 retina ACGTTTTCCG 1.8 0.0018 E14.5 retina CCCAACACTG (5) 1.8 0.0018 E14.5 retina CTTGATGCTT (2) 1.8 0.0018 E16.5 retina ACGTTTTCCG 5.4 0.0054 E16.5 retina AGGAGTGAAG (2) 5.4 0.0054 E16.5 retina TGAGTGAAGA 1.8 0.0018 E18.5 retina AGGAGTGAAG (2) 7.3 0.0073 E18.5 retina CTTGATGCTT (2) 1.8 0.0018 E18.5 retina GGGGGGAGGG (17) 1.8 0.0018 E18.5 retina TGAGTGAAGA 1.8 0.0018 P0.5 retina TGAGTGAAGA 7.9 0.0079 P0.5 retina AGGAGTGAAG (2) 2 0.002 P0.5 retina CCCAACACTG (5) 2 0.002 P0.5 retina CTTGATGCTT (2) 2 0.002 P0.5 retina GCACTGCATT 2 0.002 P0.5 retina GCGGACTACC (3) 2 0.002 P2.5 retina TGAGTGAAGA 10.6 0.0106 P2.5 retina CCCAACACTG (5) 7 0.007 P2.5 retina ACGTTTTCCG 5.3 0.0053 P2.5 retina AGGAGTGAAG (2) 1.8 0.0018 P2.5 retina CTTGATGCTT (2) 1.8 0.0018 P2.5 retina GGGGGGAGGG (17) 1.8 0.0018 P4.5 retina TGAGTGAAGA 7.9 0.0079 P4.5 retina ACGTTTTCCG 2 0.002 P4.5 retina AGGAGTGAAG (2) 2 0.002 P4.5 retina CCCAACACTG (5) 2 0.002 P4.5 retina CTTGATGCTT (2) 2 0.002 P4.5 retina GCACTGCATT 2 0.002 P4.5 retina GGGGGGAGGG (17) 2 0.002 P6.5 retina TGAGTGAAGA 6.7 0.0067 P6.5 retina CTTGATGCTT (2) 5 0.005 P6.5 retina GCACTGCATT 5 0.005 P6.5 retina CCCAACACTG (5) 3.3 0.0033 P6.5 retina ACGTTTTCCG 1.7 0.0017 P6.5 retina AGGAGTGAAG (2) 1.7 0.0017 P6.5 retina GCGGACTACC (3) 1.7 0.0017 P10.5 crx- retina TGAGTGAAGA 14.9 0.0149 P10.5 crx- retina ACGTTTTCCG 7.4 0.0074 P10.5 crx- retina CTTGATGCTT (2) 3.7 0.0037 P10.5 crx- retina CCCAACACTG (5) 1.9 0.0019 P10.5 crx- retina GCACTGCATT 1.9 0.0019 P10.5 crx+ retina GCACTGCATT 7.7 0.0077 P10.5 crx+ retina CCCAACACTG (5) 3.8 0.0038 P10.5 crx+ retina TGAGTGAAGA 3.8 0.0038 P10.5 crx+ retina ACGTTTTCCG 1.9 0.0019 P10.5 crx+ retina GGGGGGAGGG (17) 1.9 0.0019 Adult retinal CCCAACACTG (5) 1.9 0.0019 Adult retinal GCACTGCATT 1.9 0.0019 Adult retinal TGAGTGAAGA 1.9 0.0019 ONL GGGGGGAGGG (17) 1.9 0.0019