Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.2845	Ubtf	upstream binding transcription factor, RNA polymerase I	11		21429
Gene Ontology	DNA binding | nucleolus | nucleus | protein binding | regulation of transcription, DNA-dependent | transcription factor activity | transcription factor complex
Human Homolog	UBTF[upstream binding transcription factor, RNA polymerase I]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 102 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GATGAAGACT (11) 24.5 0.0245 P8 Cb GC AAGGATGTGC (4) 16.3 0.0163 P8 Cb GC GTGGAGATTG (4) 14.7 0.0147 P8 Cb GC GACAATGGAC 3.3 0.0033 P8 Cb GC GAGAAGAAGG (11) 3.3 0.0033 P8 Cb GC CAGCCTCCTA 1.6 0.0016 P8 Cb GC GAGAAGGGGG (6) 1.6 0.0016 Cb medulloblastoma AAGGATGTGC (4) 37 0.037 Cb medulloblastoma GTGGAGATTG (4) 9.2 0.0092 Cb medulloblastoma GAGAAGAAGG (11) 4.6 0.0046 Cb medulloblastoma GATGAAGACT (11) 4.6 0.0046 Cb medulloblastoma ACCAAGCTCC 2.3 0.0023 Cb medulloblastoma CAGCCTCCTA 2.3 0.0023 Cb medulloblastoma GTGCTATGCA (3) 2.3 0.0023 P8 GC+1d culture AAGGATGTGC (4) 17.1 0.0171 P8 GC+1d culture GTGGAGATTG (4) 16 0.016 P8 GC+1d culture CAGCCTCCTA 9.1 0.0091 P8 GC+1d culture GATGAAGACT (11) 9.1 0.0091 P8 GC+1d culture GACAATGGAC 5.7 0.0057 P8 GC+1d culture ACCAAGCTCC 2.3 0.0023 P8 GC+1d culture GTGCTATGCA (3) 2.3 0.0023 P8 GC+SHH+1d culture AAGGATGTGC (4) 15.2 0.0152 P8 GC+SHH+1d culture GTGGAGATTG (4) 14.1 0.0141 P8 GC+SHH+1d culture GATGAAGACT (11) 8.2 0.0082 P8 GC+SHH+1d culture GACAATGGAC 4.7 0.0047 P8 GC+SHH+1d culture CAGCCTCCTA 3.5 0.0035 P8 GC+SHH+1d culture TCTATCCCCC (2) 3.5 0.0035 P8 GC+SHH+1d culture GAGAAGAAGG (11) 1.2 0.0012 3T3 fibroblasts AAGGATGTGC (4) 24.5 0.0245 3T3 fibroblasts GATGAAGACT (11) 10.5 0.0105 3T3 fibroblasts GACAATGGAC 7 0.007 E15 cortex GTGGAGATTG (4) 29.7 0.0297 E15 cortex GATGAAGACT (11) 19.8 0.0198 E15 cortex AAGGATGTGC (4) 9.9 0.0099 E15 cortex GTGCTATGCA (3) 4.9 0.0049 P1 cortex AAGGATGTGC (4) 4.5 0.0045 P1 cortex GACAATGGAC 4.5 0.0045 P1 cortex GATGAAGACT (11) 4.5 0.0045 P1 cortex GTGGAGATTG (4) 4.5 0.0045 Hypothalamus AAGGATGTGC (4) 14.5 0.0145 Hypothalamus GACAATGGAC 1.8 0.0018 Hypothalamus GAGAAGGGGG (6) 1.8 0.0018 Hypothalamus GTGGAGATTG (4) 1.8 0.0018 E12.5 retina GATGAAGACT (11) 28.2 0.0282 E12.5 retina GTGGAGATTG (4) 11.3 0.0113 E12.5 retina AAGGATGTGC (4) 9.4 0.0094 E12.5 retina CAGCCTCCTA 3.8 0.0038 E12.5 retina GACAATGGAC 3.8 0.0038 E14.5 retina AAGGATGTGC (4) 12.8 0.0128 E14.5 retina GTGGAGATTG (4) 9.1 0.0091 E14.5 retina GATGAAGACT (11) 5.5 0.0055 E14.5 retina CAGCCTCCTA 3.6 0.0036 E14.5 retina GCTATCCAGG 3.6 0.0036 E16.5 retina GTGGAGATTG (4) 18.1 0.0181 E16.5 retina AAGGATGTGC (4) 14.5 0.0145 E16.5 retina GATGAAGACT (11) 10.9 0.0109 E16.5 retina GACAATGGAC 1.8 0.0018 E18.5 retina GTGGAGATTG (4) 9.1 0.0091 E18.5 retina AAGGATGTGC (4) 7.3 0.0073 E18.5 retina GATGAAGACT (11) 5.5 0.0055 E18.5 retina CAGCCTCCTA 1.8 0.0018 P0.5 retina GATGAAGACT (11) 17.7 0.0177 P0.5 retina AAGGATGTGC (4) 9.8 0.0098 P0.5 retina GTGGAGATTG (4) 9.8 0.0098 P0.5 retina GACAATGGAC 7.9 0.0079 P0.5 retina GCTATCCAGG 2 0.002 P2.5 retina GATGAAGACT (11) 14.1 0.0141 P2.5 retina GTGGAGATTG (4) 8.8 0.0088 P2.5 retina CAGCCTCCTA 7 0.007 P2.5 retina AAGGATGTGC (4) 3.5 0.0035 P2.5 retina GACAATGGAC 3.5 0.0035 P2.5 retina GAGAAGGGGG (6) 1.8 0.0018 P4.5 retina GTGGAGATTG (4) 11.9 0.0119 P4.5 retina GATGAAGACT (11) 5.9 0.0059 P4.5 retina AAGGATGTGC (4) 4 0.004 P4.5 retina CAGCCTCCTA 2 0.002 P4.5 retina GAGAAGGGGG (6) 2 0.002 P6.5 retina AAGGATGTGC (4) 11.7 0.0117 P6.5 retina GATGAAGACT (11) 11.7 0.0117 P6.5 retina CAGCCTCCTA 8.3 0.0083 P6.5 retina GTGGAGATTG (4) 8.3 0.0083 P6.5 retina GACAATGGAC 1.7 0.0017 P6.5 retina GAGAAGGGGG (6) 1.7 0.0017 P6.5 retina GCTATCCAGG 1.7 0.0017 P6.5 retina GTGCTATGCA (3) 1.7 0.0017 P10.5 crx- retina AAGGATGTGC (4) 61.3 0.0613 P10.5 crx- retina GATGAAGACT (11) 9.3 0.0093 P10.5 crx- retina GTGGAGATTG (4) 9.3 0.0093 P10.5 crx- retina GACAATGGAC 3.7 0.0037 P10.5 crx+ retina AAGGATGTGC (4) 13.5 0.0135 P10.5 crx+ retina GTGGAGATTG (4) 11.5 0.0115 P10.5 crx+ retina GATGAAGACT (11) 9.6 0.0096 P10.5 crx+ retina CAGCCTCCTA 5.8 0.0058 P10.5 crx+ retina GACAATGGAC 1.9 0.0019 Adult retinal AAGGATGTGC (4) 20.4 0.0204 Adult retinal GATGAAGACT (11) 20.4 0.0204 Adult retinal GACAATGGAC 5.6 0.0056 Adult retinal GTGGAGATTG (4) 5.6 0.0056 ONL AAGGATGTGC (4) 7.7 0.0077 ONL GATGAAGACT (11) 7.7 0.0077 ONL CAGCCTCCTA 1.9 0.0019 ONL GAGAAGAAGG (11) 1.9 0.0019