Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.286593	Smarca4	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	9	9 6.0 cM	20586
Gene Ontology	ATP binding | ATP dependent helicase activity | ATPase activity | DNA binding | helicase activity | nucleic acid binding | nucleosome assembly | nucleus | organogenesis | protein binding | SWI/SNF complex
Human Homolog	SMARCA4[SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 96 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CGCGTGCCGG 14.7 0.0147 P8 Cb GC CCAACACTGA (6) 8.2 0.0082 P8 Cb GC TACCAGCACA (4) 4.9 0.0049 P8 Cb GC CAATCTTCCA 3.3 0.0033 P8 Cb GC CCTTCAGTCC (5) 3.3 0.0033 P8 Cb GC TCAAAAAAAG (4) 1.6 0.0016 Cb medulloblastoma CGCGTGCCGG 6.9 0.0069 Cb medulloblastoma TACCAGCACA (4) 2.3 0.0023 Cb medulloblastoma TCAGACCTGC (4) 2.3 0.0023 P8 GC+1d culture CGCGTGCCGG 33.1 0.0331 P8 GC+1d culture CCTTCAGTCC (5) 5.7 0.0057 P8 GC+1d culture GACTCACTCA (3) 3.4 0.0034 P8 GC+1d culture CAATCTTCCA 1.1 0.0011 P8 GC+1d culture GAGAGGAGGA (6) 1.1 0.0011 P8 GC+1d culture TCAAAAAAAG (4) 1.1 0.0011 P8 GC+SHH+1d culture CGCGTGCCGG 34 0.034 P8 GC+SHH+1d culture TACCAGCACA (4) 9.4 0.0094 P8 GC+SHH+1d culture CCTTCAGTCC (5) 4.7 0.0047 P8 GC+SHH+1d culture TGTACAGTTC (4) 2.3 0.0023 P8 GC+SHH+1d culture TCAAAAAAAG (4) 1.2 0.0012 3T3 fibroblasts CGCGTGCCGG 21 0.021 3T3 fibroblasts CCAACACTGA (6) 17.5 0.0175 3T3 fibroblasts TACCAGCACA (4) 10.5 0.0105 E15 cortex CGCGTGCCGG 118.7 0.1187 E15 cortex CCAACACTGA (6) 9.9 0.0099 E15 cortex GAGAGGAGGA (6) 4.9 0.0049 E15 cortex TACCAGCACA (4) 4.9 0.0049 E15 cortex TGAAGAGGAA (5) 4.9 0.0049 P1 cortex CGCGTGCCGG 22.7 0.0227 P1 cortex CCAACACTGA (6) 13.6 0.0136 Hypothalamus CGCGTGCCGG 7.2 0.0072 Hypothalamus GCCTTGGACC (2) 5.4 0.0054 Hypothalamus CCAACACTGA (6) 1.8 0.0018 Hypothalamus TACCAGCACA (4) 1.8 0.0018 E12.5 retina TACCAGCACA (4) 18.8 0.0188 E12.5 retina CGCGTGCCGG 13.1 0.0131 E12.5 retina CCTTCAGTCC (5) 3.8 0.0038 E12.5 retina GACTCACTCA (3) 1.9 0.0019 E14.5 retina CGCGTGCCGG 23.7 0.0237 E14.5 retina TACCAGCACA (4) 10.9 0.0109 E14.5 retina CATCCACTGA 3.6 0.0036 E14.5 retina CCAACACTGA (6) 1.8 0.0018 E14.5 retina GAGAGGAGGA (6) 1.8 0.0018 E14.5 retina TCAAAAAAAG (4) 1.8 0.0018 E16.5 retina CGCGTGCCGG 38 0.038 E16.5 retina AAAGTGCCAA 5.4 0.0054 E16.5 retina GCCTTGGACC (2) 5.4 0.0054 E16.5 retina TACCAGCACA (4) 5.4 0.0054 E16.5 retina TGAAGAGGAA (5) 3.6 0.0036 E16.5 retina CATCCACTGA 1.8 0.0018 E16.5 retina CCCTCAGTCC 1.8 0.0018 E16.5 retina CTGTGCCCAC (3) 1.8 0.0018 E16.5 retina GACTCACTCA (3) 1.8 0.0018 E16.5 retina TGTACAGTTC (4) 1.8 0.0018 E18.5 retina CGCGTGCCGG 10.9 0.0109 E18.5 retina TACCAGCACA (4) 10.9 0.0109 P0.5 retina CGCGTGCCGG 35.3 0.0353 P0.5 retina CCTTCAGTCC (5) 3.9 0.0039 P0.5 retina TACCAGCACA (4) 3.9 0.0039 P0.5 retina CTGTGCCCAC (3) 2 0.002 P0.5 retina GACTCACTCA (3) 2 0.002 P0.5 retina TGAAGAGGAA (5) 2 0.002 P2.5 retina CGCGTGCCGG 24.6 0.0246 P2.5 retina TACCAGCACA (4) 10.6 0.0106 P2.5 retina CCTTCAGTCC (5) 5.3 0.0053 P2.5 retina CATCCACTGA 1.8 0.0018 P2.5 retina CCCTCAGTCC 1.8 0.0018 P2.5 retina CTGTGCCCAC (3) 1.8 0.0018 P2.5 retina GACTCACTCA (3) 1.8 0.0018 P2.5 retina GCCTTGGACC (2) 1.8 0.0018 P4.5 retina CGCGTGCCGG 25.8 0.0258 P4.5 retina TACCAGCACA (4) 7.9 0.0079 P4.5 retina CCAACACTGA (6) 4 0.004 P4.5 retina CCCTCAGTCC 2 0.002 P4.5 retina GCCTTGGACC (2) 2 0.002 P6.5 retina CGCGTGCCGG 18.3 0.0183 P6.5 retina TACCAGCACA (4) 8.3 0.0083 P6.5 retina CCAACACTGA (6) 1.7 0.0017 P6.5 retina CCTTCAGTCC (5) 1.7 0.0017 P6.5 retina GACTCACTCA (3) 1.7 0.0017 P10.5 crx- retina CGCGTGCCGG 16.7 0.0167 P10.5 crx- retina AAAGTGCCAA 1.9 0.0019 P10.5 crx- retina CCAACACTGA (6) 1.9 0.0019 P10.5 crx- retina TGAAGAGGAA (5) 1.9 0.0019 P10.5 crx+ retina CGCGTGCCGG 26.9 0.0269 P10.5 crx+ retina CCAACACTGA (6) 5.8 0.0058 P10.5 crx+ retina TACCAGCACA (4) 3.8 0.0038 P10.5 crx+ retina CCTTCAGTCC (5) 1.9 0.0019 P10.5 crx+ retina CTGTGCCCAC (3) 1.9 0.0019 Adult retinal CGCGTGCCGG 24.1 0.0241 Adult retinal GACTCACTCA (3) 3.7 0.0037 Adult retinal CTGTGCCCAC (3) 1.9 0.0019 Adult retinal TACCAGCACA (4) 1.9 0.0019 Adult retinal TGTACAGTTC (4) 1.9 0.0019 ONL CCTTCAGTCC (5) 1.9 0.0019 ONL CGCGTGCCGG 1.9 0.0019