Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.28721
Brd3
bromodomain containing 3
2
67382
Mm.28721
D2Bwg1423e
DNA segment, Chr 2, Brigham & Women's Genetics 1423 expressed
2
2 20.0 cM
329372
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 175 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
AGCCTATGAT (
5
)
9.8
0.0098
P8 Cb GC
AACCTTTCTC
(
2
)
6.5
0.0065
P8 Cb GC
TCACCTTCTG (
4
)
6.5
0.0065
P8 Cb GC
GTGAAAAAAA (
22
)
4.9
0.0049
P8 Cb GC
GAGGCGCCTG
(
2
)
3.3
0.0033
P8 Cb GC
GGAACCAGCC
(
4
)
3.3
0.0033
P8 Cb GC
GTGACAAAAA (
11
)
3.3
0.0033
P8 Cb GC
ACTTTTCTCT
(
2
)
1.6
0.0016
P8 Cb GC
AGAAGAAAAT (
8
)
1.6
0.0016
P8 Cb GC
ATTACCAGAG
(
2
)
1.6
0.0016
Cb medulloblastoma
GTGAAAAAAA (
22
)
43.9
0.0439
Cb medulloblastoma
AGCCTATGAT (
5
)
13.9
0.0139
Cb medulloblastoma
AGAAGAAAAT (
8
)
9.2
0.0092
Cb medulloblastoma
GGAACCAGCC
(
4
)
4.6
0.0046
Cb medulloblastoma
GTGACAAAAA (
11
)
4.6
0.0046
Cb medulloblastoma
TCACCTTCTG (
4
)
4.6
0.0046
Cb medulloblastoma
ACAGCTGCAG
(
2
)
2.3
0.0023
Cb medulloblastoma
TCTTAAAAAC (
6
)
2.3
0.0023
P8 GC+1d culture
AACCTTTCTC
(
2
)
13.7
0.0137
P8 GC+1d culture
TCACCTTCTG (
4
)
11.4
0.0114
P8 GC+1d culture
GTGAAAAAAA (
22
)
6.8
0.0068
P8 GC+1d culture
AGAAGAAAAT (
8
)
3.4
0.0034
P8 GC+1d culture
GGAACCAGCC
(
4
)
3.4
0.0034
P8 GC+1d culture
TGTAGAGTGA
(
2
)
3.4
0.0034
P8 GC+1d culture
AGCCTATGAT (
5
)
2.3
0.0023
P8 GC+1d culture
TCTTTCTGCC (
3
)
2.3
0.0023
P8 GC+1d culture
TGACCTCTAG
(
3
)
2.3
0.0023
P8 GC+1d culture
CAAGTTTACC
(
2
)
1.1
0.0011
P8 GC+1d culture
GAGGCGCCTG
(
2
)
1.1
0.0011
P8 GC+1d culture
GCCACCACTT
(
4
)
1.1
0.0011
P8 GC+SHH+1d culture
GTGAAAAAAA (
22
)
10.5
0.0105
P8 GC+SHH+1d culture
GGAACCAGCC
(
4
)
7
0.007
P8 GC+SHH+1d culture
TCACCTTCTG (
4
)
7
0.007
P8 GC+SHH+1d culture
TCTTTCTGCC (
3
)
4.7
0.0047
P8 GC+SHH+1d culture
AACCTTTCTC
(
2
)
3.5
0.0035
P8 GC+SHH+1d culture
ACAGCTGCAG
(
2
)
2.3
0.0023
P8 GC+SHH+1d culture
AGAAGAAAAT (
8
)
2.3
0.0023
P8 GC+SHH+1d culture
CAAGTTTACC
(
2
)
2.3
0.0023
P8 GC+SHH+1d culture
TGACCTCTAG
(
3
)
2.3
0.0023
P8 GC+SHH+1d culture
AGCCTATGAT (
5
)
1.2
0.0012
P8 GC+SHH+1d culture
GCCACCACTT
(
4
)
1.2
0.0012
P8 GC+SHH+1d culture
GCCAGGAAGC
(
6
)
1.2
0.0012
P8 GC+SHH+1d culture
GGCAGGCCCT
(
3
)
1.2
0.0012
P8 GC+SHH+1d culture
GTGACAAAAA (
11
)
1.2
0.0012
3T3 fibroblasts
GGAACCAGCC
(
4
)
14
0.014
E15 cortex
GAGGCGCCTG
(
2
)
29.7
0.0297
E15 cortex
CAAGTTTACC
(
2
)
19.8
0.0198
E15 cortex
AACCTTTCTC
(
2
)
14.8
0.0148
E15 cortex
GACCTCAGCA (
10
)
9.9
0.0099
E15 cortex
GCCAGGAAGC
(
6
)
9.9
0.0099
E15 cortex
GGAACCAGCC
(
4
)
9.9
0.0099
E15 cortex
ACTTTTCTCT
(
2
)
4.9
0.0049
E15 cortex
AGAAGAAAAT (
8
)
4.9
0.0049
E15 cortex
AGCTATGATG
(
2
)
4.9
0.0049
E15 cortex
GGCAGGCCCT
(
3
)
4.9
0.0049
E15 cortex
TCTTTCTGCC (
3
)
4.9
0.0049
E15 cortex
TGACCTCTAG
(
3
)
4.9
0.0049
P1 cortex
GGAACCAGCC
(
4
)
18.2
0.0182
P1 cortex
TCTTTCTGCC (
3
)
13.6
0.0136
P1 cortex
AACCTTTCTC
(
2
)
9.1
0.0091
P1 cortex
ACTTTTCTCT
(
2
)
9.1
0.0091
P1 cortex
CAAGTTTACC
(
2
)
4.5
0.0045
P1 cortex
GAGGCGCCTG
(
2
)
4.5
0.0045
P1 cortex
TCACCTTCTG (
4
)
4.5
0.0045
Hypothalamus
GTGAAAAAAA (
22
)
18.1
0.0181
Hypothalamus
AGAAGAAAAT (
8
)
9.1
0.0091
Hypothalamus
GGAACCAGCC
(
4
)
3.6
0.0036
Hypothalamus
AGCCTATGAT (
5
)
1.8
0.0018
Hypothalamus
CAAGTTTACC
(
2
)
1.8
0.0018
Hypothalamus
GACCTCAGCA (
10
)
1.8
0.0018
Hypothalamus
TCACCTTCTG (
4
)
1.8
0.0018
E12.5 retina
GTGAAAAAAA (
22
)
11.3
0.0113
E12.5 retina
TCACCTTCTG (
4
)
11.3
0.0113
E12.5 retina
AACCTTTCTC
(
2
)
9.4
0.0094
E12.5 retina
GTGACAAAAA (
11
)
5.6
0.0056
E12.5 retina
ACAGCTGCAG
(
2
)
1.9
0.0019
E12.5 retina
ACTTTTCTCT
(
2
)
1.9
0.0019
E12.5 retina
AGAAGAAAAT (
8
)
1.9
0.0019
E12.5 retina
AGCCTATGAT (
5
)
1.9
0.0019
E12.5 retina
AGCTATGATG
(
2
)
1.9
0.0019
E12.5 retina
GGAACCAGCC
(
4
)
1.9
0.0019
E12.5 retina
TCTTAAAAAC (
6
)
1.9
0.0019
E12.5 retina
TGTAGAGTGA
(
2
)
1.9
0.0019
E14.5 retina
GTGAAAAAAA (
22
)
12.8
0.0128
E14.5 retina
TCACCTTCTG (
4
)
12.8
0.0128
E14.5 retina
AACCTTTCTC
(
2
)
5.5
0.0055
E14.5 retina
GGAACCAGCC
(
4
)
5.5
0.0055
E14.5 retina
AGCCTATGAT (
5
)
3.6
0.0036
E14.5 retina
AGAAGAAAAT (
8
)
1.8
0.0018
E14.5 retina
GAGGCGCCTG
(
2
)
1.8
0.0018
E14.5 retina
GCCACCACTT
(
4
)
1.8
0.0018
E14.5 retina
GCCAGGAAGC
(
6
)
1.8
0.0018
E14.5 retina
GTGACAAAAA (
11
)
1.8
0.0018
E16.5 retina
AGCCTATGAT (
5
)
16.3
0.0163
E16.5 retina
GGAACCAGCC
(
4
)
7.2
0.0072
E16.5 retina
GTGAAAAAAA (
22
)
5.4
0.0054
E16.5 retina
TCACCTTCTG (
4
)
5.4
0.0054
E16.5 retina
AACCTTTCTC
(
2
)
1.8
0.0018
E16.5 retina
AGAAGAAAAT (
8
)
1.8
0.0018
E16.5 retina
GAGGCGCCTG
(
2
)
1.8
0.0018
E16.5 retina
TCTTAAAAAC (
6
)
1.8
0.0018
E18.5 retina
GTGAAAAAAA (
22
)
20
0.02
E18.5 retina
AACCTTTCTC
(
2
)
14.6
0.0146
E18.5 retina
AGAAGAAAAT (
8
)
3.6
0.0036
E18.5 retina
TCACCTTCTG (
4
)
3.6
0.0036
E18.5 retina
AGCCTATGAT (
5
)
1.8
0.0018
E18.5 retina
GGAACCAGCC
(
4
)
1.8
0.0018
E18.5 retina
GGCAGGCCCT
(
3
)
1.8
0.0018
P0.5 retina
GGAACCAGCC
(
4
)
7.9
0.0079
P0.5 retina
GTGAAAAAAA (
22
)
7.9
0.0079
P0.5 retina
ACTTTTCTCT
(
2
)
3.9
0.0039
P0.5 retina
GAGGCGCCTG
(
2
)
3.9
0.0039
P0.5 retina
AACCTTTCTC
(
2
)
2
0.002
P0.5 retina
ACAGCTGCAG
(
2
)
2
0.002
P0.5 retina
AGCCTATGAT (
5
)
2
0.002
P0.5 retina
GGGGGGCGGG (
11
)
2
0.002
P0.5 retina
TCACCTTCTG (
4
)
2
0.002
P0.5 retina
TGACCTCTAG
(
3
)
2
0.002
P2.5 retina
GTGAAAAAAA (
22
)
10.6
0.0106
P2.5 retina
AGCCTATGAT (
5
)
8.8
0.0088
P2.5 retina
AGAAGAAAAT (
8
)
7
0.007
P2.5 retina
AACCTTTCTC
(
2
)
3.5
0.0035
P2.5 retina
GAGGCGCCTG
(
2
)
3.5
0.0035
P2.5 retina
GGAACCAGCC
(
4
)
1.8
0.0018
P2.5 retina
GGCAGGCCCT
(
3
)
1.8
0.0018
P2.5 retina
GTGACAAAAA (
11
)
1.8
0.0018
P2.5 retina
TCACCTTCTG (
4
)
1.8
0.0018
P2.5 retina
TCTTTCTGCC (
3
)
1.8
0.0018
P2.5 retina
TGACCTCTAG
(
3
)
1.8
0.0018
P4.5 retina
GTGAAAAAAA (
22
)
23.8
0.0238
P4.5 retina
AACCTTTCTC
(
2
)
5.9
0.0059
P4.5 retina
AGCCTATGAT (
5
)
5.9
0.0059
P4.5 retina
GTGACAAAAA (
11
)
5.9
0.0059
P4.5 retina
AGAAGAAAAT (
8
)
4
0.004
P4.5 retina
ACAGCTGCAG
(
2
)
2
0.002
P4.5 retina
CAAGTTTACC
(
2
)
2
0.002
P4.5 retina
GGAACCAGCC
(
4
)
2
0.002
P4.5 retina
TGACCTCTAG
(
3
)
2
0.002
P6.5 retina
AACCTTTCTC
(
2
)
10
0.01
P6.5 retina
TCACCTTCTG (
4
)
6.7
0.0067
P6.5 retina
GTGAAAAAAA (
22
)
5
0.005
P6.5 retina
ACTTTTCTCT
(
2
)
1.7
0.0017
P6.5 retina
AGAAGAAAAT (
8
)
1.7
0.0017
P6.5 retina
ATTACCAGAG
(
2
)
1.7
0.0017
P6.5 retina
GGAACCAGCC
(
4
)
1.7
0.0017
P6.5 retina
GGGGGGCGGG (
11
)
1.7
0.0017
P10.5 crx- retina
TCACCTTCTG (
4
)
9.3
0.0093
P10.5 crx- retina
AGCCTATGAT (
5
)
3.7
0.0037
P10.5 crx- retina
GAGGCGCCTG
(
2
)
3.7
0.0037
P10.5 crx- retina
GTGAAAAAAA (
22
)
3.7
0.0037
P10.5 crx- retina
TGACCTCTAG
(
3
)
1.9
0.0019
P10.5 crx+ retina
AGCCTATGAT (
5
)
11.5
0.0115
P10.5 crx+ retina
GTGAAAAAAA (
22
)
5.8
0.0058
P10.5 crx+ retina
AACCTTTCTC
(
2
)
3.8
0.0038
P10.5 crx+ retina
GGAACCAGCC
(
4
)
3.8
0.0038
P10.5 crx+ retina
TCACCTTCTG (
4
)
3.8
0.0038
P10.5 crx+ retina
GGGGGGCGGG (
11
)
1.9
0.0019
P10.5 crx+ retina
GTGACAAAAA (
11
)
1.9
0.0019
Adult retinal
TCACCTTCTG (
4
)
7.4
0.0074
Adult retinal
GTGAAAAAAA (
22
)
3.7
0.0037
Adult retinal
AACCTTTCTC
(
2
)
1.9
0.0019
Adult retinal
ACAGCTGCAG
(
2
)
1.9
0.0019
Adult retinal
AGAAGAAAAT (
8
)
1.9
0.0019
Adult retinal
AGCCTATGAT (
5
)
1.9
0.0019
Adult retinal
GGAACCAGCC
(
4
)
1.9
0.0019
Adult retinal
TCTTTCTGCC (
3
)
1.9
0.0019
Adult retinal
TGACCTCTAG
(
3
)
1.9
0.0019
ONL
GTGAAAAAAA (
22
)
5.7
0.0057
ONL
AACCTTTCTC
(
2
)
3.8
0.0038
ONL
AGCCTATGAT (
5
)
3.8
0.0038
ONL
ATTACCAGAG
(
2
)
3.8
0.0038
ONL
AGAAGAAAAT (
8
)
1.9
0.0019
ONL
GGAACCAGCC
(
4
)
1.9
0.0019
ONL
TCTTAAAAAC (
6
)
1.9
0.0019
ONL
TGTAGAGTGA
(
2
)
1.9
0.0019
