Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.287982	C1d	nuclear DNA binding protein	11		57316
Gene Ontology	DNA binding | ligand-dependent nuclear receptor interactor activity | negative regulation of transcription | protein binding | receptor activity | transcription corepressor activity | transcriptional repressor complex
Human Homolog	C1D[nuclear DNA-binding protein]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 89 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TTATTAAAAT (6) 11.4 0.0114 P8 Cb GC TTCCATTTAA (2) 6.5 0.0065 P8 Cb GC TTTTCAAAAA (9) 3.3 0.0033 P8 Cb GC ATGCTTTATA (4) 1.6 0.0016 P8 Cb GC CGTTTGTAGA (2) 1.6 0.0016 Cb medulloblastoma TTTTCAAAAA (9) 13.9 0.0139 Cb medulloblastoma TTATTAAAAT (6) 9.2 0.0092 Cb medulloblastoma CGTTTGTAGA (2) 6.9 0.0069 Cb medulloblastoma ATGCTTTATA (4) 2.3 0.0023 Cb medulloblastoma TATAAATTTA 2.3 0.0023 P8 GC+1d culture TTTTCAAAAA (9) 37.7 0.0377 P8 GC+1d culture TTATTAAAAT (6) 12.6 0.0126 P8 GC+1d culture TTCCATTTAA (2) 9.1 0.0091 P8 GC+1d culture CGTTTGTAGA (2) 1.1 0.0011 P8 GC+1d culture TGGTTGTCTA 1.1 0.0011 P8 GC+SHH+1d culture TTATTAAAAT (6) 26.9 0.0269 P8 GC+SHH+1d culture TTTTCAAAAA (9) 19.9 0.0199 P8 GC+SHH+1d culture TTCCATTTAA (2) 7 0.007 P8 GC+SHH+1d culture TGGTTGTCTA 1.2 0.0012 P8 GC+SHH+1d culture TTTCTGTGAT (2) 1.2 0.0012 3T3 fibroblasts CGTTTGTAGA (2) 3.5 0.0035 3T3 fibroblasts TTTTCAAAAA (9) 3.5 0.0035 P1 cortex TTATTAAAAT (6) 13.6 0.0136 Hypothalamus TTATTAAAAT (6) 10.9 0.0109 Hypothalamus TTCCATTTAA (2) 9.1 0.0091 Hypothalamus TATAAATTTA 7.2 0.0072 Hypothalamus TTTTCAAAAA (9) 7.2 0.0072 Hypothalamus CGTTTGTAGA (2) 1.8 0.0018 Hypothalamus TTTCTGTGAT (2) 1.8 0.0018 E12.5 retina TTATTAAAAT (6) 9.4 0.0094 E12.5 retina TTCCATTTAA (2) 3.8 0.0038 E12.5 retina TTTTCAAAAA (9) 3.8 0.0038 E12.5 retina CGTTTGTAGA (2) 1.9 0.0019 E12.5 retina TATAAATTTA 1.9 0.0019 E14.5 retina TTATTAAAAT (6) 14.6 0.0146 E14.5 retina TTCCATTTAA (2) 10.9 0.0109 E14.5 retina TTTTCAAAAA (9) 5.5 0.0055 E14.5 retina CGTTTGTAGA (2) 3.6 0.0036 E14.5 retina TATAAATTTA 1.8 0.0018 E14.5 retina TGGTTGTCTA 1.8 0.0018 E16.5 retina TTATTAAAAT (6) 12.7 0.0127 E16.5 retina TTCCATTTAA (2) 10.9 0.0109 E16.5 retina ATGCTTTATA (4) 1.8 0.0018 E16.5 retina TTTCTGTGAT (2) 1.8 0.0018 E18.5 retina TTATTAAAAT (6) 29.1 0.0291 E18.5 retina TTCCATTTAA (2) 16.4 0.0164 E18.5 retina CGTTTGTAGA (2) 3.6 0.0036 E18.5 retina ATGCTTTATA (4) 1.8 0.0018 E18.5 retina TTTTCAAAAA (9) 1.8 0.0018 P0.5 retina TTATTAAAAT (6) 5.9 0.0059 P0.5 retina TTCCATTTAA (2) 2 0.002 P2.5 retina TTATTAAAAT (6) 10.6 0.0106 P2.5 retina TTCCATTTAA (2) 8.8 0.0088 P2.5 retina CGTTTGTAGA (2) 1.8 0.0018 P2.5 retina TATAAATTTA 1.8 0.0018 P2.5 retina TTGAACTAAC 1.8 0.0018 P2.5 retina TTTCTGTGAT (2) 1.8 0.0018 P2.5 retina TTTTCAAAAA (9) 1.8 0.0018 P4.5 retina TTCCATTTAA (2) 15.9 0.0159 P4.5 retina TTATTAAAAT (6) 11.9 0.0119 P4.5 retina TGGTTGTCTA 5.9 0.0059 P4.5 retina TATAAATTTA 4 0.004 P4.5 retina TTGAACTAAC 2 0.002 P6.5 retina TTATTAAAAT (6) 23.3 0.0233 P6.5 retina TTCCATTTAA (2) 10 0.01 P6.5 retina CGTTTGTAGA (2) 1.7 0.0017 P6.5 retina TATAAATTTA 1.7 0.0017 P10.5 crx- retina TTATTAAAAT (6) 9.3 0.0093 P10.5 crx- retina TTCCATTTAA (2) 9.3 0.0093 P10.5 crx- retina TTTTCAAAAA (9) 3.7 0.0037 P10.5 crx- retina ATGCTTTATA (4) 1.9 0.0019 P10.5 crx- retina CGTTTGTAGA (2) 1.9 0.0019 P10.5 crx- retina TATAAATTTA 1.9 0.0019 P10.5 crx+ retina TTATTAAAAT (6) 9.6 0.0096 P10.5 crx+ retina CGTTTGTAGA (2) 3.8 0.0038 P10.5 crx+ retina TTCCATTTAA (2) 3.8 0.0038 P10.5 crx+ retina TTTCTGTGAT (2) 3.8 0.0038 P10.5 crx+ retina ATGCTTTATA (4) 1.9 0.0019 Adult retinal TTATTAAAAT (6) 5.6 0.0056 Adult retinal TTCCATTTAA (2) 3.7 0.0037 Adult retinal CGTTTGTAGA (2) 1.9 0.0019 Adult retinal TATAAATTTA 1.9 0.0019 Adult retinal TTTCTGTGAT (2) 1.9 0.0019 Adult retinal TTTTCAAAAA (9) 1.9 0.0019 ONL TTATTAAAAT (6) 7.7 0.0077 ONL TTCCATTTAA (2) 3.8 0.0038 ONL ATGCTTTATA (4) 1.9 0.0019 ONL CGTTTGTAGA (2) 1.9 0.0019 ONL TTTTCAAAAA (9) 1.9 0.0019