Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.288151
BC003993
cDNA sequence BC003993
2
80744
Human Homolog
KIAA1604[KIAA1604 protein]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 95 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
GAAAAAAAAA (
204
)
45.7
0.0457
P8 Cb GC
TCAAAAAAAA (
60
)
17.9
0.0179
P8 Cb GC
CCTTACACTT
(
5
)
16.3
0.0163
P8 Cb GC
CAAATCCATA (
2
)
1.6
0.0016
P8 Cb GC
GAATCATTTG (
5
)
1.6
0.0016
P8 Cb GC
TTTTATAATT
(
5
)
1.6
0.0016
Cb medulloblastoma
GAAAAAAAAA (
204
)
173.4
0.1734
Cb medulloblastoma
TCAAAAAAAA (
60
)
99.4
0.0994
Cb medulloblastoma
CCTTACACTT
(
5
)
16.2
0.0162
Cb medulloblastoma
GAATCATTTG (
5
)
6.9
0.0069
Cb medulloblastoma
TCAAAAAGAA
(
2
)
2.3
0.0023
P8 GC+1d culture
GAAAAAAAAA (
204
)
41.1
0.0411
P8 GC+1d culture
CCTTACACTT
(
5
)
26.3
0.0263
P8 GC+1d culture
TCAAAAAAAA (
60
)
17.1
0.0171
P8 GC+1d culture
TGTTCTGCCT (
4
)
2.3
0.0023
P8 GC+1d culture
CAAATCCATA (
2
)
1.1
0.0011
P8 GC+1d culture
TTTTATAATT
(
5
)
1.1
0.0011
P8 GC+SHH+1d culture
GAAAAAAAAA (
204
)
77.3
0.0773
P8 GC+SHH+1d culture
TCAAAAAAAA (
60
)
51.5
0.0515
P8 GC+SHH+1d culture
CCTTACACTT
(
5
)
24.6
0.0246
P8 GC+SHH+1d culture
TTTTATAATT
(
5
)
2.3
0.0023
P8 GC+SHH+1d culture
CAAATCCATA (
2
)
1.2
0.0012
P8 GC+SHH+1d culture
TCAAAAAGAA
(
2
)
1.2
0.0012
3T3 fibroblasts
TCAAAAAAAA (
60
)
7
0.007
3T3 fibroblasts
TGTTCTGCCT (
4
)
3.5
0.0035
E15 cortex
GAAAAAAAAA (
204
)
54.4
0.0544
E15 cortex
CCTTACACTT
(
5
)
14.8
0.0148
E15 cortex
TCAAAAAAAA (
60
)
14.8
0.0148
E15 cortex
TGTTCTGCCT (
4
)
9.9
0.0099
P1 cortex
GAAAAAAAAA (
204
)
45.5
0.0455
P1 cortex
CCTTACACTT
(
5
)
27.3
0.0273
P1 cortex
TCAAAAAAAA (
60
)
22.7
0.0227
P1 cortex
CAAATCCATA (
2
)
4.5
0.0045
Hypothalamus
GAAAAAAAAA (
204
)
67
0.067
Hypothalamus
TCAAAAAAAA (
60
)
39.8
0.0398
Hypothalamus
CCTTACACTT
(
5
)
27.2
0.0272
Hypothalamus
TGTTCTGCCT (
4
)
3.6
0.0036
E12.5 retina
GAAAAAAAAA (
204
)
46.9
0.0469
E12.5 retina
TCAAAAAAAA (
60
)
18.8
0.0188
E12.5 retina
CCTTACACTT
(
5
)
13.1
0.0131
E12.5 retina
TTTTATAATT
(
5
)
5.6
0.0056
E12.5 retina
CAAATCCATA (
2
)
1.9
0.0019
E14.5 retina
TCAAAAAAAA (
60
)
41.9
0.0419
E14.5 retina
GAAAAAAAAA (
204
)
34.6
0.0346
E14.5 retina
CCTTACACTT
(
5
)
21.9
0.0219
E14.5 retina
TGTTCTGCCT (
4
)
5.5
0.0055
E14.5 retina
TTTTATAATT
(
5
)
1.8
0.0018
E16.5 retina
GAAAAAAAAA (
204
)
23.5
0.0235
E16.5 retina
CCTTACACTT
(
5
)
19.9
0.0199
E16.5 retina
TCAAAAAAAA (
60
)
18.1
0.0181
E16.5 retina
TGTTCTGCCT (
4
)
1.8
0.0018
E18.5 retina
GAAAAAAAAA (
204
)
65.5
0.0655
E18.5 retina
TCAAAAAAAA (
60
)
49.1
0.0491
E18.5 retina
CCTTACACTT
(
5
)
18.2
0.0182
E18.5 retina
TGTTCTGCCT (
4
)
1.8
0.0018
P0.5 retina
GAAAAAAAAA (
204
)
35.3
0.0353
P0.5 retina
TCAAAAAAAA (
60
)
31.4
0.0314
P0.5 retina
CCTTACACTT
(
5
)
21.6
0.0216
P0.5 retina
TGTTCTGCCT (
4
)
2
0.002
P2.5 retina
GAAAAAAAAA (
204
)
86.2
0.0862
P2.5 retina
TCAAAAAAAA (
60
)
35.2
0.0352
P2.5 retina
CCTTACACTT
(
5
)
31.7
0.0317
P2.5 retina
TTTTATAATT
(
5
)
1.8
0.0018
P4.5 retina
GAAAAAAAAA (
204
)
51.5
0.0515
P4.5 retina
TCAAAAAAAA (
60
)
37.6
0.0376
P4.5 retina
CCTTACACTT
(
5
)
19.8
0.0198
P4.5 retina
TTTTATAATT
(
5
)
2
0.002
P6.5 retina
GAAAAAAAAA (
204
)
40
0.04
P6.5 retina
CCTTACACTT
(
5
)
33.3
0.0333
P6.5 retina
TCAAAAAAAA (
60
)
31.7
0.0317
P6.5 retina
CAAATCCATA (
2
)
5
0.005
P6.5 retina
TGTTCTGCCT (
4
)
1.7
0.0017
P6.5 retina
TTTTATAATT
(
5
)
1.7
0.0017
P10.5 crx- retina
CCTTACACTT
(
5
)
20.4
0.0204
P10.5 crx- retina
GAAAAAAAAA (
204
)
16.7
0.0167
P10.5 crx- retina
TCAAAAAAAA (
60
)
14.9
0.0149
P10.5 crx- retina
TTTTATAATT
(
5
)
5.6
0.0056
P10.5 crx- retina
TGTTCTGCCT (
4
)
3.7
0.0037
P10.5 crx- retina
GAATCATTTG (
5
)
1.9
0.0019
P10.5 crx- retina
TCAAAAAGAA
(
2
)
1.9
0.0019
P10.5 crx+ retina
GAAAAAAAAA (
204
)
42.3
0.0423
P10.5 crx+ retina
CCTTACACTT
(
5
)
23.1
0.0231
P10.5 crx+ retina
TCAAAAAAAA (
60
)
17.3
0.0173
P10.5 crx+ retina
TGTTCTGCCT (
4
)
9.6
0.0096
P10.5 crx+ retina
TTTTATAATT
(
5
)
1.9
0.0019
Adult retinal
TCAAAAAAAA (
60
)
20.4
0.0204
Adult retinal
GAAAAAAAAA (
204
)
16.7
0.0167
Adult retinal
CCTTACACTT
(
5
)
14.8
0.0148
Adult retinal
TTTTATAATT
(
5
)
5.6
0.0056
Adult retinal
TGTTCTGCCT (
4
)
3.7
0.0037
ONL
GAAAAAAAAA (
204
)
24.9
0.0249
ONL
TCAAAAAAAA (
60
)
15.3
0.0153
ONL
CCTTACACTT
(
5
)
3.8
0.0038
ONL
TGTTCTGCCT (
4
)
3.8
0.0038
ONL
TTTTATAATT
(
5
)
3.8
0.0038
