Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.288282	D330040H18Rik	RIKEN cDNA D330040H18 gene	16		320847
Mm.288282	6720473M08Rik	RIKEN cDNA 6720473M08 gene	16		320121
Mm.288282	Alcam	activated leukocyte cell adhesion molecule	16		11658
Gene Ontology	cell adhesion | extrinsic to plasma membrane | extrinsic to plasma membrane | guanyl-nucleotide exchange factor adaptor activity | integral to membrane | plasma membrane | protein binding | signal transduction
Human Homolog	ALCAM[activated leukocyte cell adhesion molecule]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 77 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC ATAAAAAAAA (33) 11.4 0.0114 P8 Cb GC TGTTTGGAGC (6) 6.5 0.0065 P8 Cb GC CTGCTGTCTA (6) 3.3 0.0033 P8 Cb GC GGACCTTTTT (5) 1.6 0.0016 P8 Cb GC GTAGAAGGGA (3) 1.6 0.0016 P8 Cb GC TACCGCGTCA (3) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma ATAAAAAAAA (33) 25.4 0.0254 Cb medulloblastoma TGTTTGGAGC (6) 6.9 0.0069 Cb medulloblastoma CTGCTGTCTA (6) 2.3 0.0023 Cb medulloblastoma GTAGAAGGGA (3) 2.3 0.0023 Cb medulloblastoma TACCGCGTCA (3) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture TGTTTGGAGC (6) 6.8 0.0068 P8 GC+1d culture ATAAAAAAAA (33) 5.7 0.0057 P8 GC+1d culture GTAGAAGGGA (3) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture ATAAAAAAAA (33) 21.1 0.0211 P8 GC+SHH+1d culture TGTTTGGAGC (6) 8.2 0.0082 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts GTAGAAGGGA (3) 7 0.007 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex TGTTTGGAGC (6) 14.8 0.0148 E15 cortex GGACCTTTTT (5) 9.9 0.0099 E15 cortex TACCGCGTCA (3) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex CTGCTGTCTA (6) 4.5 0.0045 P1 cortex GGACCTTTTT (5) 4.5 0.0045 P1 cortex TACCGCGTCA (3) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus ATAAAAAAAA (33) 7.2 0.0072 Hypothalamus TGTTTGGAGC (6) 3.6 0.0036 Hypothalamus CTGCTGTCTA (6) 1.8 0.0018 Hypothalamus GGACCTTTTT (5) 1.8 0.0018 Hypothalamus TACCGCGTCA (3) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina ATAAAAAAAA (33) 11.3 0.0113 E12.5 retina TGTTTGGAGC (6) 7.5 0.0075 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina ATAAAAAAAA (33) 16.4 0.0164 E14.5 retina TGTTTGGAGC (6) 5.5 0.0055 E14.5 retina GTAGAAGGGA (3) 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina ATAAAAAAAA (33) 5.4 0.0054 E16.5 retina TGTTTGGAGC (6) 3.6 0.0036 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina ATAAAAAAAA (33) 30.9 0.0309 E18.5 retina TGTTTGGAGC (6) 3.6 0.0036 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina TGTTTGGAGC (6) 7.9 0.0079 P0.5 retina ATAAAAAAAA (33) 2 0.002 P0.5 retina GTAGAAGGGA (3) 2 0.002 P0.5 retina TGTAACCATT (7) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina ATAAAAAAAA (33) 14.1 0.0141 P2.5 retina TGTTTGGAGC (6) 3.5 0.0035 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina ATAAAAAAAA (33) 21.8 0.0218 P4.5 retina TGTTTGGAGC (6) 4 0.004 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina ATAAAAAAAA (33) 10 0.01 P6.5 retina TGTTTGGAGC (6) 5 0.005 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina ATAAAAAAAA (33) 5.6 0.0056 P10.5 crx- retina GTAGAAGGGA (3) 5.6 0.0056 P10.5 crx- retina TGTTTGGAGC (6) 5.6 0.0056 P10.5 crx- retina CTGCTGTCTA (6) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina TGTTTGGAGC (6) 9.6 0.0096 P10.5 crx+ retina ATAAAAAAAA (33) 3.8 0.0038 P10.5 crx+ retina TACCGCGTCA (3) 3.8 0.0038 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal TGTAACCATT (7) 3.7 0.0037 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL ATAAAAAAAA (33) 1.9 0.0019 ONL TGTTTGGAGC (6) 1.9 0.0019