Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.288645
2500001H09Rik
RIKEN cDNA 2500001H09 gene
7
74737
Mm.288645
6430511E19Rik
RIKEN cDNA 6430511E19 gene
7
320056
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 96 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
GTAGCTCACA (
30
)
16.3
0.0163
P8 Cb GC
GCAAAGAGCA
(
7
)
3.3
0.0033
P8 Cb GC
GCCAGCCAGG (
10
)
3.3
0.0033
P8 Cb GC
TAATAAACTG
(
2
)
3.3
0.0033
P8 Cb GC
TTTTAAAACA (
6
)
3.3
0.0033
P8 Cb GC
TGATTTCTTT
(
4
)
1.6
0.0016
P8 Cb GC
TTACCCATCT
(
2
)
1.6
0.0016
P8 Cb GC
TTATAAACTG (
4
)
1.6
0.0016
Cb medulloblastoma
GTAGCTCACA (
30
)
18.5
0.0185
Cb medulloblastoma
TTATAAACTG (
4
)
6.9
0.0069
Cb medulloblastoma
GCCAGCCAGG (
10
)
2.3
0.0023
Cb medulloblastoma
TGATTTCTTT
(
4
)
2.3
0.0023
Cb medulloblastoma
TTTATTTTAA (
7
)
2.3
0.0023
Cb medulloblastoma
TTTTAAAACA (
6
)
2.3
0.0023
P8 GC+1d culture
GTAGCTCACA (
30
)
27.4
0.0274
P8 GC+1d culture
GCCAGCCAGG (
10
)
5.7
0.0057
P8 GC+1d culture
GCAAAGAGCA
(
7
)
2.3
0.0023
P8 GC+1d culture
ATATTTGTAG
(
3
)
1.1
0.0011
P8 GC+1d culture
GAGCCTATTT (
7
)
1.1
0.0011
P8 GC+1d culture
TAATAAACTG
(
2
)
1.1
0.0011
P8 GC+1d culture
TGATTTCTTT
(
4
)
1.1
0.0011
P8 GC+1d culture
TTTATTTTAA (
7
)
1.1
0.0011
P8 GC+SHH+1d culture
GTAGCTCACA (
30
)
15.2
0.0152
P8 GC+SHH+1d culture
TAATAAACTG
(
2
)
5.9
0.0059
P8 GC+SHH+1d culture
GCCAGCCAGG (
10
)
3.5
0.0035
P8 GC+SHH+1d culture
GCAAAGAGCA
(
7
)
2.3
0.0023
P8 GC+SHH+1d culture
ATATTTGTAG
(
3
)
1.2
0.0012
P8 GC+SHH+1d culture
TGATTTCTTT
(
4
)
1.2
0.0012
P8 GC+SHH+1d culture
TTATAAACTG (
4
)
1.2
0.0012
3T3 fibroblasts
GTAGCTCACA (
30
)
14
0.014
3T3 fibroblasts
GCAAAGAGCA
(
7
)
3.5
0.0035
3T3 fibroblasts
GCCAGCCAGG (
10
)
3.5
0.0035
E15 cortex
GTAGCTCACA (
30
)
29.7
0.0297
E15 cortex
GCCAGCCAGG (
10
)
19.8
0.0198
E15 cortex
CACCTCCACT (
3
)
4.9
0.0049
E15 cortex
GCAAAGAGCA
(
7
)
4.9
0.0049
P1 cortex
GTAGCTCACA (
30
)
13.6
0.0136
P1 cortex
TTATAAACTG (
4
)
9.1
0.0091
P1 cortex
TAATAAACTG
(
2
)
4.5
0.0045
Hypothalamus
GTAGCTCACA (
30
)
29
0.029
Hypothalamus
GCCAGCCAGG (
10
)
5.4
0.0054
Hypothalamus
TTATAAACTG (
4
)
5.4
0.0054
Hypothalamus
CACCTCCACT (
3
)
1.8
0.0018
Hypothalamus
TTTATTTTAA (
7
)
1.8
0.0018
E12.5 retina
GTAGCTCACA (
30
)
30
0.03
E12.5 retina
GCCAGCCAGG (
10
)
3.8
0.0038
E12.5 retina
TTATAAACTG (
4
)
1.9
0.0019
E14.5 retina
GTAGCTCACA (
30
)
31
0.031
E14.5 retina
TAATAAACTG
(
2
)
5.5
0.0055
E14.5 retina
GCCAGCCAGG (
10
)
1.8
0.0018
E14.5 retina
TTATAAACTG (
4
)
1.8
0.0018
E16.5 retina
GTAGCTCACA (
30
)
41.7
0.0417
E16.5 retina
GCCAGCCAGG (
10
)
7.2
0.0072
E16.5 retina
GCAAAGAGCA
(
7
)
1.8
0.0018
E16.5 retina
TAATAAACTG
(
2
)
1.8
0.0018
E16.5 retina
TTATAAACTG (
4
)
1.8
0.0018
E18.5 retina
GTAGCTCACA (
30
)
16.4
0.0164
E18.5 retina
GCCAGCCAGG (
10
)
5.5
0.0055
E18.5 retina
ATGGTTTTTT
(
4
)
3.6
0.0036
E18.5 retina
TAATAAACTG
(
2
)
3.6
0.0036
E18.5 retina
GAGCCTATTT (
7
)
1.8
0.0018
E18.5 retina
TTATAAACTG (
4
)
1.8
0.0018
P0.5 retina
GTAGCTCACA (
30
)
25.5
0.0255
P0.5 retina
GCCAGCCAGG (
10
)
11.8
0.0118
P0.5 retina
GCAAAGAGCA
(
7
)
2
0.002
P2.5 retina
GTAGCTCACA (
30
)
22.9
0.0229
P2.5 retina
GCCAGCCAGG (
10
)
12.3
0.0123
P2.5 retina
TAATAAACTG
(
2
)
8.8
0.0088
P4.5 retina
GTAGCTCACA (
30
)
25.8
0.0258
P4.5 retina
TAATAAACTG
(
2
)
11.9
0.0119
P4.5 retina
GCCAGCCAGG (
10
)
5.9
0.0059
P4.5 retina
TTACCCATCT
(
2
)
2
0.002
P4.5 retina
TTATAAACTG (
4
)
2
0.002
P6.5 retina
GTAGCTCACA (
30
)
18.3
0.0183
P6.5 retina
GCCAGCCAGG (
10
)
6.7
0.0067
P6.5 retina
TAATAAACTG
(
2
)
6.7
0.0067
P6.5 retina
TTATAAACTG (
4
)
1.7
0.0017
P6.5 retina
TTTATTTTAA (
7
)
1.7
0.0017
P10.5 crx- retina
GTAGCTCACA (
30
)
16.7
0.0167
P10.5 crx- retina
TGATTTCTTT
(
4
)
5.6
0.0056
P10.5 crx- retina
TTATAAACTG (
4
)
3.7
0.0037
P10.5 crx- retina
GCCAGCCAGG (
10
)
1.9
0.0019
P10.5 crx+ retina
GTAGCTCACA (
30
)
28.8
0.0288
P10.5 crx+ retina
CACCTCCACT (
3
)
1.9
0.0019
P10.5 crx+ retina
GCAAAGAGCA
(
7
)
1.9
0.0019
P10.5 crx+ retina
GCCAGCCAGG (
10
)
1.9
0.0019
P10.5 crx+ retina
TAATAAACTG
(
2
)
1.9
0.0019
P10.5 crx+ retina
TTATAAACTG (
4
)
1.9
0.0019
Adult retinal
GTAGCTCACA (
30
)
16.7
0.0167
Adult retinal
GCCAGCCAGG (
10
)
3.7
0.0037
Adult retinal
GCAAAGAGCA
(
7
)
1.9
0.0019
Adult retinal
TTACCCATCT
(
2
)
1.9
0.0019
Adult retinal
TTATAAACTG (
4
)
1.9
0.0019
ONL
GTAGCTCACA (
30
)
24.9
0.0249
ONL
ATGGTTTTTT
(
4
)
3.8
0.0038
ONL
TTATAAACTG (
4
)
1.9
0.0019
