Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.288698
2610011I18Rik
RIKEN cDNA 2610011I18 gene
10
70295
Mm.288698
Srgap1
SLIT-ROBO Rho GTPase activating protein 1
10
117600
Mm.288698
C030027H14Rik
RIKEN cDNA C030027H14 gene
10
77465
Mm.288698
4930402N20Rik
RIKEN cDNA 4930402N20 gene
10
73819
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 42 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
ACTTCTGTTC
(
5
)
3.3
0.0033
P8 Cb GC
GGTGATGAGG (
7
)
1.6
0.0016
P8 Cb GC
TGGGACGCCA
(
4
)
1.6
0.0016
Cb medulloblastoma
GGTGATGAGG (
7
)
4.6
0.0046
Cb medulloblastoma
TACCATTACA
(
4
)
2.3
0.0023
P8 GC+1d culture
GGTGATGAGG (
7
)
5.7
0.0057
P8 GC+1d culture
TACCATTACA
(
4
)
1.1
0.0011
P8 GC+1d culture
TGGGACGCCA
(
4
)
1.1
0.0011
P8 GC+SHH+1d culture
GGTGATGAGG (
7
)
9.4
0.0094
P8 GC+SHH+1d culture
TACCATTACA
(
4
)
1.2
0.0012
3T3 fibroblasts
GGTGATGAGG (
7
)
21
0.021
E15 cortex
TGGGACGCCA
(
4
)
9.9
0.0099
E15 cortex
GGTGATGAGG (
7
)
4.9
0.0049
P1 cortex
TACCATTACA
(
4
)
13.6
0.0136
P1 cortex
TGGGACGCCA
(
4
)
9.1
0.0091
P1 cortex
CTCAGGAACA (
5
)
4.5
0.0045
P1 cortex
GGTGATGAGG (
7
)
4.5
0.0045
Hypothalamus
GGTGATGAGG (
7
)
7.2
0.0072
Hypothalamus
TACCATTACA
(
4
)
1.8
0.0018
E12.5 retina
GGTGATGAGG (
7
)
5.6
0.0056
E12.5 retina
TACCATTACA
(
4
)
1.9
0.0019
E14.5 retina
GGTGATGAGG (
7
)
1.8
0.0018
E16.5 retina
CTCAGGAACA (
5
)
3.6
0.0036
E16.5 retina
ACTTCTGTTC
(
5
)
1.8
0.0018
E16.5 retina
GGTGATGAGG (
7
)
1.8
0.0018
E16.5 retina
TACCATTACA
(
4
)
1.8
0.0018
E18.5 retina
GGTGATGAGG (
7
)
1.8
0.0018
P0.5 retina
GGTGATGAGG (
7
)
7.9
0.0079
P2.5 retina
GGTGATGAGG (
7
)
3.5
0.0035
P2.5 retina
CTCAGGAACA (
5
)
1.8
0.0018
P4.5 retina
TGGGACGCCA
(
4
)
4
0.004
P4.5 retina
CTCAGGAACA (
5
)
2
0.002
P4.5 retina
GGTGATGAGG (
7
)
2
0.002
P4.5 retina
TACCATTACA
(
4
)
2
0.002
P6.5 retina
GGTGATGAGG (
7
)
5
0.005
P6.5 retina
TACCATTACA
(
4
)
1.7
0.0017
P10.5 crx- retina
GGTGATGAGG (
7
)
11.1
0.0111
P10.5 crx- retina
TACCATTACA
(
4
)
3.7
0.0037
P10.5 crx+ retina
GGTGATGAGG (
7
)
3.8
0.0038
Adult retinal
GGTGATGAGG (
7
)
18.5
0.0185
Adult retinal
TGGGACGCCA
(
4
)
1.9
0.0019
ONL
GGTGATGAGG (
7
)
3.8
0.0038
