Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.28940
A930011E06Rik
RIKEN cDNA A930011E06 gene
16
77953
Mm.28940
5530401J07Rik
RIKEN cDNA 5530401J07 gene
16
74503
Mm.28940
Bbx
bobby sox homolog (Drosophila)
16
70508
Mm.28940
A730021G18Rik
RIKEN cDNA A730021G18 gene
16
319782
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 40 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
GCCTTCCGTG (
16
)
4.9
0.0049
P8 Cb GC
CTAAAGTACT
(
4
)
1.6
0.0016
P8 Cb GC
TAATAAAATG (
5
)
1.6
0.0016
Cb medulloblastoma
GCCTTCCGTG (
16
)
6.9
0.0069
P8 GC+1d culture
TAATAAAATG (
5
)
3.4
0.0034
P8 GC+1d culture
CTAAAGTACT
(
4
)
2.3
0.0023
P8 GC+1d culture
GCCCTGGCTT (
12
)
1.1
0.0011
P8 GC+1d culture
GCCTTCCGTG (
16
)
1.1
0.0011
P8 GC+SHH+1d culture
TAATAAAATG (
5
)
5.9
0.0059
P8 GC+SHH+1d culture
CTAAAGTACT
(
4
)
2.3
0.0023
P8 GC+SHH+1d culture
GCCTTCCGTG (
16
)
2.3
0.0023
3T3 fibroblasts
GCCTTCCGTG (
16
)
3.5
0.0035
E15 cortex
GCCCTGGCTT (
12
)
4.9
0.0049
P1 cortex
TAATAAAATG (
5
)
9.1
0.0091
Hypothalamus
GCCTTCCGTG (
16
)
7.2
0.0072
Hypothalamus
CTAAAGTACT
(
4
)
1.8
0.0018
Hypothalamus
GCCCTGGCTT (
12
)
1.8
0.0018
Hypothalamus
TAATAAAATG (
5
)
1.8
0.0018
E12.5 retina
CTAAAGTACT
(
4
)
1.9
0.0019
E12.5 retina
TAATAAAATG (
5
)
1.9
0.0019
E14.5 retina
TAATAAAATG (
5
)
3.6
0.0036
E14.5 retina
CTAAAGTACT
(
4
)
1.8
0.0018
E16.5 retina
GCCTTCCGTG (
16
)
5.4
0.0054
E16.5 retina
CTAAAGTACT
(
4
)
3.6
0.0036
E16.5 retina
TAATAAAATG (
5
)
1.8
0.0018
E18.5 retina
TAATAAAATG (
5
)
12.7
0.0127
P0.5 retina
GCCTTCCGTG (
16
)
3.9
0.0039
P2.5 retina
CTAAAGTACT
(
4
)
1.8
0.0018
P4.5 retina
TAATAAAATG (
5
)
4
0.004
P4.5 retina
CTAAAGTACT
(
4
)
2
0.002
P6.5 retina
TAATAAAATG (
5
)
3.3
0.0033
P6.5 retina
CTAAAGTACT
(
4
)
1.7
0.0017
P10.5 crx- retina
GCCTTCCGTG (
16
)
5.6
0.0056
P10.5 crx- retina
CTAAAGTACT
(
4
)
3.7
0.0037
P10.5 crx- retina
TAATAAAATG (
5
)
1.9
0.0019
P10.5 crx+ retina
CTAAAGTACT
(
4
)
3.8
0.0038
Adult retinal
GCCTTCCGTG (
16
)
7.4
0.0074
Adult retinal
CTAAAGTACT
(
4
)
1.9
0.0019
ONL
CTAAAGTACT
(
4
)
1.9
0.0019
ONL
GCCTTCCGTG (
16
)
1.9
0.0019
