Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.29055	E430007M08Rik	RIKEN cDNA E430007M08 gene	11		319869
Mm.29055	Cbx1	chromobox homolog 1 (Drosophila HP1 beta)	11	11 58.0 cM	12412
Gene Ontology	centric heterochromatin | chromatin | chromatin assembly/disassembly | chromatin binding | chromosome, pericentric region | nuclear heterochromatin | nucleoplasm | nucleus | protein binding
Human Homolog	CBX1[chromobox homolog 1 (HP1 beta homolog Drosophila )]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 6 In Situ Hybridization Images

Images -- Click to Enlarge

SAGE Tags

Total 77 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGTTAAGATG (6) 16.3 0.0163 P8 Cb GC ATTCAAGACA (2) 4.9 0.0049 P8 Cb GC GAAACTGACT (2) 3.3 0.0033 P8 Cb GC ATTCAGGAAG (3) 1.6 0.0016 P8 Cb GC CAATCCCAGC (4) 1.6 0.0016 P8 Cb GC TGTGTAGTTT (5) 1.6 0.0016 Cb medulloblastoma TGTTAAGATG (6) 2.3 0.0023 P8 GC+1d culture TGTTAAGATG (6) 11.4 0.0114 P8 GC+1d culture ATTCAAGACA (2) 5.7 0.0057 P8 GC+1d culture TGTGTAGTTT (5) 2.3 0.0023 P8 GC+SHH+1d culture TGTTAAGATG (6) 14.1 0.0141 P8 GC+SHH+1d culture ATTCAAGACA (2) 4.7 0.0047 P8 GC+SHH+1d culture TGTGTAGTTT (5) 3.5 0.0035 3T3 fibroblasts ATTCAAGACA (2) 3.5 0.0035 3T3 fibroblasts ATTCAGGAAG (3) 3.5 0.0035 E15 cortex ATTCAAGACA (2) 9.9 0.0099 E15 cortex AGACAGATAA (5) 4.9 0.0049 E15 cortex TGTTAAGATG (6) 4.9 0.0049 P1 cortex AGACAGATAA (5) 4.5 0.0045 Hypothalamus TGTGTAGTTT (5) 3.6 0.0036 Hypothalamus AGACAGATAA (5) 1.8 0.0018 Hypothalamus ATTCAGGAAG (3) 1.8 0.0018 Hypothalamus ATTTCAAGAC (3) 1.8 0.0018 Hypothalamus TGTTAAGATG (6) 1.8 0.0018 E12.5 retina TGTTAAGATG (6) 11.3 0.0113 E12.5 retina AAGGACAAAA (3) 1.9 0.0019 E12.5 retina AGACAGATAA (5) 1.9 0.0019 E12.5 retina ATTCAAGACA (2) 1.9 0.0019 E12.5 retina ATTCAGGAAG (3) 1.9 0.0019 E12.5 retina TGTGTAGTTT (5) 1.9 0.0019 E12.5 retina TTCCTGATGA (4) 1.9 0.0019 E14.5 retina TGTTAAGATG (6) 25.5 0.0255 E14.5 retina ATTCAAGACA (2) 7.3 0.0073 E14.5 retina TGTGTAGTTT (5) 7.3 0.0073 E14.5 retina CAATCCCAGC (4) 3.6 0.0036 E14.5 retina GAAACTGACT (2) 3.6 0.0036 E14.5 retina TTCCTGATGA (4) 3.6 0.0036 E16.5 retina TGTTAAGATG (6) 29 0.029 E16.5 retina GAAACTGACT (2) 5.4 0.0054 E16.5 retina TGTGTAGTTT (5) 5.4 0.0054 E16.5 retina AAGGACAAAA (3) 3.6 0.0036 E16.5 retina ATTCAAGACA (2) 3.6 0.0036 E18.5 retina TGTTAAGATG (6) 27.3 0.0273 E18.5 retina AGACAGATAA (5) 3.6 0.0036 E18.5 retina ATTCAAGACA (2) 3.6 0.0036 E18.5 retina GAAACTGACT (2) 3.6 0.0036 E18.5 retina TGTGTAGTTT (5) 1.8 0.0018 P0.5 retina TGTTAAGATG (6) 19.6 0.0196 P0.5 retina ATTCAAGACA (2) 9.8 0.0098 P0.5 retina TGTGTAGTTT (5) 3.9 0.0039 P2.5 retina TGTTAAGATG (6) 14.1 0.0141 P2.5 retina GAAACTGACT (2) 7 0.007 P2.5 retina ATTCAAGACA (2) 3.5 0.0035 P2.5 retina TGTGTAGTTT (5) 3.5 0.0035 P2.5 retina TTCCTGATGA (4) 1.8 0.0018 P4.5 retina TGTGTAGTTT (5) 5.9 0.0059 P4.5 retina TGTTAAGATG (6) 5.9 0.0059 P4.5 retina ATTCAAGACA (2) 2 0.002 P4.5 retina GAAACTGACT (2) 2 0.002 P6.5 retina TGTTAAGATG (6) 6.7 0.0067 P6.5 retina GAAACTGACT (2) 3.3 0.0033 P6.5 retina TGTGTAGTTT (5) 1.7 0.0017 P10.5 crx- retina TGTTAAGATG (6) 18.6 0.0186 P10.5 crx- retina ATTCAAGACA (2) 5.6 0.0056 P10.5 crx- retina ATTCAGGAAG (3) 3.7 0.0037 P10.5 crx- retina AAGGACAAAA (3) 1.9 0.0019 P10.5 crx- retina ATTTCAAGAC (3) 1.9 0.0019 P10.5 crx- retina TGTGTAGTTT (5) 1.9 0.0019 P10.5 crx+ retina ATTCAAGACA (2) 5.8 0.0058 P10.5 crx+ retina ATTCAGGAAG (3) 3.8 0.0038 P10.5 crx+ retina TGTTAAGATG (6) 1.9 0.0019 Adult retinal ATTTCAAGAC (3) 1.9 0.0019 Adult retinal TGTGTAGTTT (5) 1.9 0.0019 Adult retinal TGTTAAGATG (6) 1.9 0.0019 Adult retinal TTCCTGATGA (4) 1.9 0.0019 ONL ATTCAGGAAG (3) 3.8 0.0038 ONL TGTGTAGTTT (5) 3.8 0.0038