Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.291192	ORF18	open reading frame 18	4	4 C7 (4 51.8 cM)	56374
Gene Ontology	integral to membrane
Human Homolog	C1orf8[chromosome 1 open reading frame 8]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 103 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TCCTGAACCC (4) 13.1 0.0131 P8 Cb GC CCCCCCGTCA 8.2 0.0082 P8 Cb GC GCAGGGGCGG (4) 4.9 0.0049 P8 Cb GC AGGAGGCAGG (3) 1.6 0.0016 P8 Cb GC CCCCGCCCCG 1.6 0.0016 P8 Cb GC TTAACCAACT (3) 1.6 0.0016 Cb medulloblastoma CCCCCCGTCA 11.6 0.0116 Cb medulloblastoma GCAGGGGCGG (4) 11.6 0.0116 Cb medulloblastoma CCCAGAGAAG 4.6 0.0046 Cb medulloblastoma AGAGGCAGGG (8) 2.3 0.0023 P8 GC+1d culture CCCCCCGTCA 11.4 0.0114 P8 GC+1d culture GCAGGGGCGG (4) 11.4 0.0114 P8 GC+1d culture TCCTGAACCC (4) 10.3 0.0103 P8 GC+1d culture AGGAGGCAGG (3) 3.4 0.0034 P8 GC+1d culture TTAACCAACT (3) 3.4 0.0034 P8 GC+1d culture AGGGAGGCGG 1.1 0.0011 P8 GC+1d culture GGAGGGGGGG (5) 1.1 0.0011 P8 GC+SHH+1d culture CCCCCCGTCA 19.9 0.0199 P8 GC+SHH+1d culture TCCTGAACCC (4) 5.9 0.0059 P8 GC+SHH+1d culture GCAGGGGCGG (4) 4.7 0.0047 P8 GC+SHH+1d culture CACACAGGAA (2) 2.3 0.0023 P8 GC+SHH+1d culture ACTAGTGCTT (80) 1.2 0.0012 P8 GC+SHH+1d culture TTAACCAACT (3) 1.2 0.0012 3T3 fibroblasts CCCCCCGTCA 73.6 0.0736 3T3 fibroblasts GCAGGGGCGG (4) 17.5 0.0175 3T3 fibroblasts AGGAGGCAGG (3) 14 0.014 E15 cortex CCCCCCGTCA 9.9 0.0099 E15 cortex CCCCGCCCCG 4.9 0.0049 E15 cortex GCAGGGGCGG (4) 4.9 0.0049 E15 cortex TCCTGAACCC (4) 4.9 0.0049 P1 cortex TCCTGAACCC (4) 13.6 0.0136 P1 cortex CCCCCCGTCA 9.1 0.0091 P1 cortex CCCAGAGAAG 4.5 0.0045 P1 cortex GCAGGGGCGG (4) 4.5 0.0045 P1 cortex TTAACCAACT (3) 4.5 0.0045 Hypothalamus AGGAGGCAGG (3) 10.9 0.0109 Hypothalamus TCCTGAACCC (4) 7.2 0.0072 Hypothalamus CCCCCCGTCA 5.4 0.0054 Hypothalamus GCAGGGGCGG (4) 3.6 0.0036 Hypothalamus CCCCGCCCCG 1.8 0.0018 E12.5 retina GCAGGGGCGG (4) 11.3 0.0113 E12.5 retina TCCTGAACCC (4) 9.4 0.0094 E12.5 retina CCCCCCGTCA 5.6 0.0056 E12.5 retina ACTAGTGCTT (80) 1.9 0.0019 E12.5 retina AGGGAGGCGG 1.9 0.0019 E14.5 retina TCCTGAACCC (4) 16.4 0.0164 E14.5 retina CCCCCCGTCA 9.1 0.0091 E14.5 retina GCAGGGGCGG (4) 1.8 0.0018 E14.5 retina GCAGGGGGGG (5) 1.8 0.0018 E16.5 retina TCCTGAACCC (4) 14.5 0.0145 E16.5 retina GCAGGGGCGG (4) 9.1 0.0091 E16.5 retina CCCCCCGTCA 7.2 0.0072 E16.5 retina AGGAGGCAGG (3) 5.4 0.0054 E16.5 retina TTAACCAACT (3) 5.4 0.0054 E16.5 retina CCCAGAGAAG 1.8 0.0018 E18.5 retina TCCTGAACCC (4) 32.7 0.0327 E18.5 retina CCCCCCGTCA 7.3 0.0073 E18.5 retina GCAGGGGCGG (4) 3.6 0.0036 E18.5 retina TTAACCAACT (3) 1.8 0.0018 P0.5 retina CCCCCCGTCA 21.6 0.0216 P0.5 retina AGAGGCAGGG (8) 7.9 0.0079 P0.5 retina TCCTGAACCC (4) 7.9 0.0079 P0.5 retina GGAGGGGGGG (5) 2 0.002 P2.5 retina TCCTGAACCC (4) 15.8 0.0158 P2.5 retina CCCCCCGTCA 10.6 0.0106 P2.5 retina GCAGGGGCGG (4) 10.6 0.0106 P2.5 retina TTAACCAACT (3) 7 0.007 P2.5 retina GCAGGGGGGG (5) 5.3 0.0053 P2.5 retina CACACAGGAA (2) 1.8 0.0018 P2.5 retina GGAGGGGGGG (5) 1.8 0.0018 P4.5 retina CCCCCCGTCA 13.9 0.0139 P4.5 retina TTAACCAACT (3) 13.9 0.0139 P4.5 retina TCCTGAACCC (4) 7.9 0.0079 P4.5 retina ACTAGTGCTT (80) 2 0.002 P4.5 retina CCCAGAGAAG 2 0.002 P4.5 retina GCAGGGGCGG (4) 2 0.002 P6.5 retina CCCCCCGTCA 31.7 0.0317 P6.5 retina GCAGGGGCGG (4) 16.7 0.0167 P6.5 retina TCCTGAACCC (4) 10 0.01 P6.5 retina AGGAGGCAGG (3) 5 0.005 P6.5 retina TTAACCAACT (3) 5 0.005 P6.5 retina AGGGAGGCGG 3.3 0.0033 P10.5 crx- retina CCCCCCGTCA 39 0.039 P10.5 crx- retina CCCAGAGAAG 5.6 0.0056 P10.5 crx- retina TCCTGAACCC (4) 5.6 0.0056 P10.5 crx- retina TTAACCAACT (3) 3.7 0.0037 P10.5 crx- retina GCAGGGGCGG (4) 1.9 0.0019 P10.5 crx+ retina GCAGGGGCGG (4) 30.8 0.0308 P10.5 crx+ retina CCCCCCGTCA 28.8 0.0288 P10.5 crx+ retina AGGAGGCAGG (3) 3.8 0.0038 P10.5 crx+ retina TCCTGAACCC (4) 3.8 0.0038 P10.5 crx+ retina CCCAGAGAAG 1.9 0.0019 P10.5 crx+ retina CCCCGCCCCG 1.9 0.0019 Adult retinal CCCCCCGTCA 25.9 0.0259 Adult retinal GCAGGGGCGG (4) 9.3 0.0093 Adult retinal AGGAGGCAGG (3) 3.7 0.0037 Adult retinal AGAGGCAGGG (8) 1.9 0.0019 Adult retinal TCCTGAACCC (4) 1.9 0.0019 Adult retinal TTAACCAACT (3) 1.9 0.0019 ONL CCCCCCGTCA 13.4 0.0134 ONL GCAGGGGCGG (4) 9.6 0.0096 ONL TCCTGAACCC (4) 3.8 0.0038 ONL CACACAGGAA (2) 1.9 0.0019