Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.291877	Brpf3	bromodomain and PHD finger containing, 3	17		268936
Gene Ontology	biological_process unknown | cellular_component unknown | molecular_function unknown
Human Homolog	BRPF3[bromodomain and PHD finger containing, 3]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 88 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CTTCTCTGTG (3) 17.9 0.0179 P8 Cb GC CTTGTCACTC (4) 9.8 0.0098 P8 Cb GC TTTTTTTTTT (433) 4.9 0.0049 P8 Cb GC ATGCTCTATT (5) 3.3 0.0033 P8 Cb GC GTGCTGAATA (3) 3.3 0.0033 P8 Cb GC GATGGCCTGA (6) 1.6 0.0016 P8 Cb GC GCACTGCCCT (11) 1.6 0.0016 P8 Cb GC TGTGCTGTTG (2) 1.6 0.0016 Cb medulloblastoma TGTGCTGTTG (2) 6.9 0.0069 Cb medulloblastoma CTTGTCACTC (4) 4.6 0.0046 Cb medulloblastoma CTTCTCTGTG (3) 2.3 0.0023 Cb medulloblastoma TTTTTTTTTT (433) 2.3 0.0023 P8 GC+1d culture TTTTTTTTTT (433) 13.7 0.0137 P8 GC+1d culture CTTGTCACTC (4) 9.1 0.0091 P8 GC+1d culture CTTCTCTGTG (3) 4.6 0.0046 P8 GC+1d culture ATGCTCTATT (5) 2.3 0.0023 P8 GC+1d culture TGTGCTGTTG (2) 2.3 0.0023 P8 GC+1d culture GCACTGCCCT (11) 1.1 0.0011 P8 GC+SHH+1d culture CTTCTCTGTG (3) 12.9 0.0129 P8 GC+SHH+1d culture CTTGTCACTC (4) 11.7 0.0117 P8 GC+SHH+1d culture TTTTTTTTTT (433) 5.9 0.0059 P8 GC+SHH+1d culture TGTGCTGTTG (2) 2.3 0.0023 P8 GC+SHH+1d culture ATGCTCTATT (5) 1.2 0.0012 P8 GC+SHH+1d culture GCACTGCCCT (11) 1.2 0.0012 3T3 fibroblasts GCACTGCCCT (11) 14 0.014 3T3 fibroblasts CTTCTCTGTG (3) 7 0.007 3T3 fibroblasts GATGGCCTGA (6) 7 0.007 3T3 fibroblasts ATGCTCTATT (5) 3.5 0.0035 3T3 fibroblasts CTTGTCACTC (4) 3.5 0.0035 3T3 fibroblasts TGTGCTGTTG (2) 3.5 0.0035 E15 cortex CTTGTCACTC (4) 4.9 0.0049 E15 cortex TGTGCTGTTG (2) 4.9 0.0049 E15 cortex TTTTTTTTTT (433) 4.9 0.0049 P1 cortex CTTCTCTGTG (3) 13.6 0.0136 P1 cortex TTTTTTTTTT (433) 4.5 0.0045 Hypothalamus CTTGTCACTC (4) 7.2 0.0072 Hypothalamus TTTTTTTTTT (433) 7.2 0.0072 Hypothalamus GTGCTGAATA (3) 5.4 0.0054 Hypothalamus CTTCTCTGTG (3) 1.8 0.0018 Hypothalamus TGTGCTGTTG (2) 1.8 0.0018 E12.5 retina CTTCTCTGTG (3) 7.5 0.0075 E12.5 retina TTTTTTTTTT (433) 7.5 0.0075 E12.5 retina CTTGTCACTC (4) 3.8 0.0038 E12.5 retina TGTGCTGTTG (2) 3.8 0.0038 E14.5 retina TTTTTTTTTT (433) 23.7 0.0237 E14.5 retina CTTCTCTGTG (3) 10.9 0.0109 E14.5 retina CTTGTCACTC (4) 1.8 0.0018 E14.5 retina GTGCTGAATA (3) 1.8 0.0018 E14.5 retina TCTCTCCCAC (2) 1.8 0.0018 E16.5 retina CTTCTCTGTG (3) 7.2 0.0072 E16.5 retina CTTGTCACTC (4) 5.4 0.0054 E16.5 retina TTTTTTTTTT (433) 5.4 0.0054 E16.5 retina GTGCTGAATA (3) 3.6 0.0036 E16.5 retina ATGCTCTATT (5) 1.8 0.0018 E16.5 retina TGTGCTGTTG (2) 1.8 0.0018 E18.5 retina TTTTTTTTTT (433) 10.9 0.0109 E18.5 retina CTTGTCACTC (4) 5.5 0.0055 E18.5 retina ATGCTCTATT (5) 1.8 0.0018 E18.5 retina GATGGCCTGA (6) 1.8 0.0018 P0.5 retina TTTTTTTTTT (433) 9.8 0.0098 P0.5 retina ATGCTCTATT (5) 3.9 0.0039 P2.5 retina CTTCTCTGTG (3) 12.3 0.0123 P2.5 retina CTTGTCACTC (4) 7 0.007 P2.5 retina TTTTTTTTTT (433) 7 0.007 P2.5 retina ATGCTCTATT (5) 3.5 0.0035 P2.5 retina TGTGCTGTTG (2) 1.8 0.0018 P4.5 retina CTTGTCACTC (4) 9.9 0.0099 P4.5 retina TTTTTTTTTT (433) 9.9 0.0099 P4.5 retina CTTCTCTGTG (3) 5.9 0.0059 P4.5 retina ATGCTCTATT (5) 2 0.002 P4.5 retina TGTGCTGTTG (2) 2 0.002 P6.5 retina CTTCTCTGTG (3) 8.3 0.0083 P6.5 retina TTTTTTTTTT (433) 8.3 0.0083 P6.5 retina CTTGTCACTC (4) 3.3 0.0033 P6.5 retina TGTGCTGTTG (2) 1.7 0.0017 P10.5 crx- retina CTTCTCTGTG (3) 14.9 0.0149 P10.5 crx- retina CTTGTCACTC (4) 5.6 0.0056 P10.5 crx- retina TCTCTCCCAC (2) 1.9 0.0019 P10.5 crx+ retina CTTGTCACTC (4) 9.6 0.0096 P10.5 crx+ retina CTTCTCTGTG (3) 3.8 0.0038 P10.5 crx+ retina TTTTTTTTTT (433) 3.8 0.0038 P10.5 crx+ retina ATGCTCTATT (5) 1.9 0.0019 Adult retinal TTTTTTTTTT (433) 7.4 0.0074 Adult retinal CTTCTCTGTG (3) 1.9 0.0019 Adult retinal CTTGTCACTC (4) 1.9 0.0019 ONL CTTCTCTGTG (3) 5.7 0.0057 ONL GTGCTGAATA (3) 3.8 0.0038 ONL TTTTTTTTTT (433) 3.8 0.0038