Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.291979
Igk-V4
immunoglobulin kappa chain variable 4 (V4)
6
6 30.0 cM
16121
Mm.291979
9530068E07Rik
RIKEN cDNA 9530068E07 gene
11
213673
Human Homolog
C5orf15[chromosome 5 open reading frame 15]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 93 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
GCTTCTTCTG (
7
)
13.1
0.0131
P8 Cb GC
TTTGCCACAG
(
3
)
4.9
0.0049
P8 Cb GC
AGCCTCAAGG (
5
)
3.3
0.0033
P8 Cb GC
CTTGGCTACC
(
3
)
1.6
0.0016
P8 Cb GC
GAGGAGGAGG (
35
)
1.6
0.0016
Cb medulloblastoma
GCTTCTTCTG (
7
)
23.1
0.0231
Cb medulloblastoma
CCCTTTCCTC (
7
)
2.3
0.0023
Cb medulloblastoma
GTTTGAATTT (
4
)
2.3
0.0023
P8 GC+1d culture
GCTTCTTCTG (
7
)
11.4
0.0114
P8 GC+1d culture
CTTGGCTACC
(
3
)
5.7
0.0057
P8 GC+1d culture
AGCCTCAAGG (
5
)
3.4
0.0034
P8 GC+1d culture
GTTTGAATTT (
4
)
2.3
0.0023
P8 GC+1d culture
AGGCTCCAGG (
5
)
1.1
0.0011
P8 GC+SHH+1d culture
GCTTCTTCTG (
7
)
10.5
0.0105
P8 GC+SHH+1d culture
AGCCTCAAGG (
5
)
4.7
0.0047
P8 GC+SHH+1d culture
CTTGGCTACC
(
3
)
3.5
0.0035
P8 GC+SHH+1d culture
GAGGAGGAGG (
35
)
1.2
0.0012
P8 GC+SHH+1d culture
GTTTGAATTT (
4
)
1.2
0.0012
3T3 fibroblasts
CTTGGCTACC
(
3
)
10.5
0.0105
3T3 fibroblasts
GCTTCTTCTG (
7
)
7
0.007
3T3 fibroblasts
AGCCTCAAGG (
5
)
3.5
0.0035
3T3 fibroblasts
GAGGAGGAGG (
35
)
3.5
0.0035
E15 cortex
CTTGGCTACC
(
3
)
9.9
0.0099
E15 cortex
GAGGAGGAGG (
35
)
4.9
0.0049
E15 cortex
GCCGCCTCCG (
5
)
4.9
0.0049
E15 cortex
GCTTCTTCTG (
7
)
4.9
0.0049
P1 cortex
GAGGAGGAGG (
35
)
4.5
0.0045
P1 cortex
GCTTCTTCTG (
7
)
4.5
0.0045
Hypothalamus
GAGGAGGAGG (
35
)
7.2
0.0072
Hypothalamus
GCTTCTTCTG (
7
)
7.2
0.0072
Hypothalamus
AGCCTCAAGG (
5
)
3.6
0.0036
Hypothalamus
CTTGGCTACC
(
3
)
3.6
0.0036
Hypothalamus
TGTGGCAGTG (
6
)
3.6
0.0036
Hypothalamus
TTTGCCACAG
(
3
)
1.8
0.0018
E12.5 retina
AGCCTCAAGG (
5
)
5.6
0.0056
E12.5 retina
GCTTCTTCTG (
7
)
5.6
0.0056
E12.5 retina
CTTGGCTACC
(
3
)
1.9
0.0019
E12.5 retina
GAGGAGGAGG (
35
)
1.9
0.0019
E12.5 retina
TTTGCCACAG
(
3
)
1.9
0.0019
E14.5 retina
GCTTCTTCTG (
7
)
5.5
0.0055
E14.5 retina
AGCCTCAAGG (
5
)
3.6
0.0036
E14.5 retina
CTTGGCTACC
(
3
)
1.8
0.0018
E14.5 retina
GCCGCCTCCG (
5
)
1.8
0.0018
E16.5 retina
GCTTCTTCTG (
7
)
12.7
0.0127
E16.5 retina
AGCCTCAAGG (
5
)
9.1
0.0091
E16.5 retina
CTTGGCTACC
(
3
)
3.6
0.0036
E16.5 retina
AAAGATGTTT
(
3
)
1.8
0.0018
E16.5 retina
AGGCTCCAGG (
5
)
1.8
0.0018
E16.5 retina
GTTTGAATTT (
4
)
1.8
0.0018
E18.5 retina
GCTTCTTCTG (
7
)
10.9
0.0109
E18.5 retina
AGCCTCAAGG (
5
)
3.6
0.0036
E18.5 retina
CTTGGCTACC
(
3
)
3.6
0.0036
P0.5 retina
CTTGGCTACC
(
3
)
11.8
0.0118
P0.5 retina
AGCCTCAAGG (
5
)
5.9
0.0059
P0.5 retina
GCTTCTTCTG (
7
)
3.9
0.0039
P0.5 retina
AAAGATGTTT
(
3
)
2
0.002
P0.5 retina
AGGCTCCAGG (
5
)
2
0.002
P2.5 retina
GCTTCTTCTG (
7
)
14.1
0.0141
P2.5 retina
AGCCTCAAGG (
5
)
5.3
0.0053
P2.5 retina
CTTGGCTACC
(
3
)
5.3
0.0053
P2.5 retina
CCCTTTCCTC (
7
)
1.8
0.0018
P2.5 retina
GAGGAGGAGG (
35
)
1.8
0.0018
P2.5 retina
TTTGCCACAG
(
3
)
1.8
0.0018
P4.5 retina
GCTTCTTCTG (
7
)
11.9
0.0119
P4.5 retina
AGCCTCAAGG (
5
)
7.9
0.0079
P4.5 retina
AAAGATGTTT
(
3
)
2
0.002
P4.5 retina
CCCTTTCCTC (
7
)
2
0.002
P4.5 retina
CTTGGCTACC
(
3
)
2
0.002
P4.5 retina
GAGGAGGAGG (
35
)
2
0.002
P6.5 retina
GCTTCTTCTG (
7
)
16.7
0.0167
P6.5 retina
AGCCTCAAGG (
5
)
6.7
0.0067
P6.5 retina
AAAGATGTTT
(
3
)
3.3
0.0033
P6.5 retina
CTTGGCTACC
(
3
)
1.7
0.0017
P10.5 crx- retina
AGCCTCAAGG (
5
)
5.6
0.0056
P10.5 crx- retina
GCTTCTTCTG (
7
)
3.7
0.0037
P10.5 crx- retina
AGGCTCCAGG (
5
)
1.9
0.0019
P10.5 crx- retina
GAGGAGGAGG (
35
)
1.9
0.0019
P10.5 crx- retina
TGTGGCAGTG (
6
)
1.9
0.0019
P10.5 crx+ retina
GCTTCTTCTG (
7
)
13.5
0.0135
P10.5 crx+ retina
AGCCTCAAGG (
5
)
11.5
0.0115
P10.5 crx+ retina
TGTGGCAGTG (
6
)
7.7
0.0077
P10.5 crx+ retina
AGGCTCCAGG (
5
)
1.9
0.0019
Adult retinal
CTTGGCTACC
(
3
)
5.6
0.0056
Adult retinal
AAAGATGTTT
(
3
)
3.7
0.0037
Adult retinal
GAGGAGGAGG (
35
)
3.7
0.0037
Adult retinal
AGCCTCAAGG (
5
)
1.9
0.0019
Adult retinal
GCCGCCTCCG (
5
)
1.9
0.0019
Adult retinal
GCTTCTTCTG (
7
)
1.9
0.0019
Adult retinal
TGTGGCAGTG (
6
)
1.9
0.0019
ONL
GCTTCTTCTG (
7
)
7.7
0.0077
ONL
AGCCTCAAGG (
5
)
1.9
0.0019
ONL
GAGGAGGAGG (
35
)
1.9
0.0019
ONL
TTTGCCACAG
(
3
)
1.9
0.0019
