Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.292904	Trpc2	transient receptor potential cation channel, subfamily C, member 2	7	7 50.0 cM	22064
Gene Ontology	calcium channel activity | calcium ion transport | cation channel activity | cation transport | cytosolic calcium ion concentration elevation | damaged DNA binding | endoplasmic reticulum membrane | Golgi membrane | integral to membrane | ion channel activity | ion transport | membrane | nuclear membrane | nucleus | receptor activity | single strand break repair | store-operated calcium channel activity
Human Homolog	TRPC2[transient receptor potential cation channel, subfamily C, member 2]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 108 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTTTAATCC (355) 52.2 0.0522 P8 Cb GC GTGGCGCACA (11) 8.2 0.0082 P8 Cb GC GCTTGTAAGG (2) 3.3 0.0033 P8 Cb GC ATTCCGAATT (107) 1.6 0.0016 P8 Cb GC CAATAAACCA 1.6 0.0016 Cb medulloblastoma CCTTTAATCC (355) 41.6 0.0416 Cb medulloblastoma GGGGGGGGGG (112) 6.9 0.0069 Cb medulloblastoma GAAAGAGGGA (5) 2.3 0.0023 P8 GC+1d culture CCTTTAATCC (355) 32 0.032 P8 GC+1d culture GAAAGAGGGA (5) 3.4 0.0034 P8 GC+1d culture GTGGCGCACA (11) 3.4 0.0034 P8 GC+1d culture GGGGGGGGGG (112) 2.3 0.0023 P8 GC+1d culture GGGTGGCTTA (5) 1.1 0.0011 P8 GC+1d culture TGTGCGTGTC (3) 1.1 0.0011 P8 GC+SHH+1d culture CCTTTAATCC (355) 25.8 0.0258 P8 GC+SHH+1d culture GGGGGGGGGG (112) 7 0.007 P8 GC+SHH+1d culture GTGGCGCACA (11) 3.5 0.0035 P8 GC+SHH+1d culture GAAAGAGGGA (5) 1.2 0.0012 P8 GC+SHH+1d culture TGTGCGTGTC (3) 1.2 0.0012 3T3 fibroblasts CCTTTAATCC (355) 70.1 0.0701 3T3 fibroblasts GTGGCGCACA (11) 28 0.028 3T3 fibroblasts CCAGCGTGTG (2) 3.5 0.0035 3T3 fibroblasts GGGGGGGGGG (112) 3.5 0.0035 3T3 fibroblasts TGTGCGTGTC (3) 3.5 0.0035 E15 cortex CCTTTAATCC (355) 54.4 0.0544 E15 cortex GTGGCGCACA (11) 44.5 0.0445 E15 cortex GAAAGAGGGA (5) 4.9 0.0049 E15 cortex GGGGGGGGGG (112) 4.9 0.0049 E15 cortex TGTGCGTGTC (3) 4.9 0.0049 P1 cortex CCTTTAATCC (355) 154.5 0.1545 P1 cortex GTGGCGCACA (11) 4.5 0.0045 Hypothalamus CCTTTAATCC (355) 19.9 0.0199 Hypothalamus GAAAGAGGGA (5) 7.2 0.0072 Hypothalamus GTGGCGCACA (11) 3.6 0.0036 Hypothalamus GGGGGGGGGG (112) 1.8 0.0018 E12.5 retina CCTTTAATCC (355) 75.1 0.0751 E12.5 retina GAAAGAGGGA (5) 7.5 0.0075 E12.5 retina CAATAAACCA 3.8 0.0038 E12.5 retina GTGGCGCACA (11) 3.8 0.0038 E14.5 retina CCTTTAATCC (355) 120.3 0.1203 E14.5 retina GTGGCGCACA (11) 10.9 0.0109 E14.5 retina GAAAGAGGGA (5) 1.8 0.0018 E14.5 retina GCTTGTAAGG (2) 1.8 0.0018 E14.5 retina GTGCTTTTTA (3) 1.8 0.0018 E16.5 retina CCTTTAATCC (355) 68.8 0.0688 E16.5 retina GTGGCGCACA (11) 9.1 0.0091 E16.5 retina CAATAAACCA 5.4 0.0054 E16.5 retina GAAAGAGGGA (5) 5.4 0.0054 E16.5 retina GTGCTTTTTA (3) 3.6 0.0036 E16.5 retina TGTGCGTGTC (3) 1.8 0.0018 E18.5 retina CCTTTAATCC (355) 23.6 0.0236 E18.5 retina GAAAGAGGGA (5) 7.3 0.0073 E18.5 retina GTGGCGCACA (11) 5.5 0.0055 E18.5 retina CAATAAACCA 3.6 0.0036 E18.5 retina CCAGCGTGTG (2) 1.8 0.0018 E18.5 retina GTGCTTTTTA (3) 1.8 0.0018 E18.5 retina TGTGCGTGTC (3) 1.8 0.0018 P0.5 retina CCTTTAATCC (355) 72.6 0.0726 P0.5 retina GTGGCGCACA (11) 5.9 0.0059 P0.5 retina CAATAAACCA 2 0.002 P0.5 retina CCAGCGTGTG (2) 2 0.002 P0.5 retina GAAAGAGGGA (5) 2 0.002 P0.5 retina GCTTGTAAGG (2) 2 0.002 P2.5 retina CCTTTAATCC (355) 70.4 0.0704 P2.5 retina GAAAGAGGGA (5) 7 0.007 P2.5 retina GGGGGGGGGG (112) 7 0.007 P2.5 retina GTGGCGCACA (11) 7 0.007 P2.5 retina CAATAAACCA 1.8 0.0018 P2.5 retina GCTTGTAAGG (2) 1.8 0.0018 P4.5 retina CCTTTAATCC (355) 43.6 0.0436 P4.5 retina GGGGGGGGGG (112) 9.9 0.0099 P4.5 retina GAAAGAGGGA (5) 7.9 0.0079 P4.5 retina GTGGCGCACA (11) 7.9 0.0079 P4.5 retina CAATAAACCA 4 0.004 P4.5 retina ATTCCGAATT (107) 2 0.002 P4.5 retina GCTTGTAAGG (2) 2 0.002 P4.5 retina TGTGCGTGTC (3) 2 0.002 P6.5 retina CCTTTAATCC (355) 70 0.07 P6.5 retina GTGGCGCACA (11) 11.7 0.0117 P6.5 retina ATTCCGAATT (107) 3.3 0.0033 P6.5 retina GAAAGAGGGA (5) 3.3 0.0033 P6.5 retina GGGGGGGGGG (112) 3.3 0.0033 P6.5 retina CAATAAACCA 1.7 0.0017 P6.5 retina GCTTGTAAGG (2) 1.7 0.0017 P10.5 crx- retina CCTTTAATCC (355) 63.2 0.0632 P10.5 crx- retina GTGGCGCACA (11) 5.6 0.0056 P10.5 crx- retina CAATAAACCA 3.7 0.0037 P10.5 crx- retina GCTTGTAAGG (2) 3.7 0.0037 P10.5 crx- retina GAAAGAGGGA (5) 1.9 0.0019 P10.5 crx- retina TGTGCGTGTC (3) 1.9 0.0019 P10.5 crx+ retina CCTTTAATCC (355) 38.4 0.0384 P10.5 crx+ retina GTGGCGCACA (11) 11.5 0.0115 P10.5 crx+ retina GGGGGGGGGG (112) 9.6 0.0096 P10.5 crx+ retina GAAAGAGGGA (5) 5.8 0.0058 P10.5 crx+ retina CAATAAACCA 3.8 0.0038 P10.5 crx+ retina GGGTGGCTTA (5) 1.9 0.0019 P10.5 crx+ retina TGTGCGTGTC (3) 1.9 0.0019 Adult retinal CCTTTAATCC (355) 129.6 0.1296 Adult retinal GTGGCGCACA (11) 22.2 0.0222 Adult retinal GGGGGGGGGG (112) 3.7 0.0037 Adult retinal GAAAGAGGGA (5) 1.9 0.0019 ONL CCTTTAATCC (355) 84.3 0.0843 ONL GTGGCGCACA (11) 13.4 0.0134 ONL ATTCCGAATT (107) 3.8 0.0038 ONL GAAAGAGGGA (5) 3.8 0.0038 ONL GGGGGGGGGG (112) 1.9 0.0019 ONL GTGCTTTTTA (3) 1.9 0.0019 ONL TGTGCGTGTC (3) 1.9 0.0019