Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.293321	Ubxd2	UBX domain containing 2	1		67812
Mm.293321	AA517465	expressed sequence AA517465	1		98209
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 136 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTTTAATCC (355) 52.2 0.0522 P8 Cb GC GCTGTTCAAA (4) 4.9 0.0049 P8 Cb GC CCTTTGATCC (22) 3.3 0.0033 P8 Cb GC AAATAGCTGG (2) 1.6 0.0016 P8 Cb GC CGTGCACACA (2) 1.6 0.0016 P8 Cb GC GAACCTAAGC (2) 1.6 0.0016 P8 Cb GC GATGTTCAAA (3) 1.6 0.0016 P8 Cb GC GTGGCTCACC (9) 1.6 0.0016 P8 Cb GC GTTGAAAAAA (2) 1.6 0.0016 Cb medulloblastoma CCTTTAATCC (355) 41.6 0.0416 Cb medulloblastoma GCTGTTCAAA (4) 16.2 0.0162 Cb medulloblastoma GTGGCTCACC (9) 4.6 0.0046 Cb medulloblastoma CCTTTGATCC (22) 2.3 0.0023 Cb medulloblastoma GATGTTCAAA (3) 2.3 0.0023 Cb medulloblastoma GTAAAGATGA (5) 2.3 0.0023 Cb medulloblastoma GTTGAAAAAA (2) 2.3 0.0023 Cb medulloblastoma TTTCCCAGAA (2) 2.3 0.0023 P8 GC+1d culture CCTTTAATCC (355) 32 0.032 P8 GC+1d culture GCTGTTCAAA (4) 4.6 0.0046 P8 GC+1d culture GTGGCTCACC (9) 3.4 0.0034 P8 GC+1d culture GTTGAAAAAA (2) 3.4 0.0034 P8 GC+1d culture AAATAGCTGG (2) 2.3 0.0023 P8 GC+1d culture CCTTTGATCC (22) 1.1 0.0011 P8 GC+1d culture CGTGCACACA (2) 1.1 0.0011 P8 GC+1d culture TTCATTTAGA (4) 1.1 0.0011 P8 GC+SHH+1d culture CCTTTAATCC (355) 25.8 0.0258 P8 GC+SHH+1d culture GCTGTTCAAA (4) 7 0.007 P8 GC+SHH+1d culture AAATAGCTGG (2) 3.5 0.0035 P8 GC+SHH+1d culture GTGGCTCACC (9) 3.5 0.0035 P8 GC+SHH+1d culture GTTGAAAAAA (2) 2.3 0.0023 P8 GC+SHH+1d culture CCTTTGATCC (22) 1.2 0.0012 P8 GC+SHH+1d culture CGTGCACACA (2) 1.2 0.0012 P8 GC+SHH+1d culture GTAAAGATGA (5) 1.2 0.0012 3T3 fibroblasts CCTTTAATCC (355) 70.1 0.0701 3T3 fibroblasts GTGGCCTTGG (4) 10.5 0.0105 3T3 fibroblasts GATGTTCAAA (3) 7 0.007 3T3 fibroblasts TTTCCCAGAA (2) 7 0.007 3T3 fibroblasts AAATAGCTGG (2) 3.5 0.0035 3T3 fibroblasts GTGGCTCACC (9) 3.5 0.0035 E15 cortex CCTTTAATCC (355) 54.4 0.0544 E15 cortex GCTGTTCAAA (4) 14.8 0.0148 E15 cortex GTGGCTCACC (9) 9.9 0.0099 E15 cortex TTTCCCAGAA (2) 9.9 0.0099 P1 cortex CCTTTAATCC (355) 154.5 0.1545 P1 cortex CCTTTGATCC (22) 13.6 0.0136 P1 cortex AAATAGCTGG (2) 4.5 0.0045 P1 cortex GCTGTTCAAA (4) 4.5 0.0045 P1 cortex GTAAAGATGA (5) 4.5 0.0045 P1 cortex GTGGCTCACC (9) 4.5 0.0045 P1 cortex TTTGACTTTT (3) 4.5 0.0045 Hypothalamus CCTTTAATCC (355) 19.9 0.0199 Hypothalamus GCTGTTCAAA (4) 10.9 0.0109 Hypothalamus GTGGCTCACC (9) 3.6 0.0036 Hypothalamus CGTGCACACA (2) 1.8 0.0018 Hypothalamus GCAAGGAACA (14) 1.8 0.0018 E12.5 retina CCTTTAATCC (355) 75.1 0.0751 E12.5 retina GCTGTTCAAA (4) 7.5 0.0075 E12.5 retina CCTTTGATCC (22) 5.6 0.0056 E12.5 retina AAATAGCTGG (2) 3.8 0.0038 E12.5 retina GATGTTCAAA (3) 3.8 0.0038 E12.5 retina GTGGCTCACC (9) 1.9 0.0019 E12.5 retina TTCATTTAGA (4) 1.9 0.0019 E14.5 retina CCTTTAATCC (355) 120.3 0.1203 E14.5 retina GTGGCTCACC (9) 3.6 0.0036 E14.5 retina AAATAGCTGG (2) 1.8 0.0018 E14.5 retina CCTTTGATCC (22) 1.8 0.0018 E14.5 retina GCTGTTCAAA (4) 1.8 0.0018 E14.5 retina TTTGACTTTT (3) 1.8 0.0018 E16.5 retina CCTTTAATCC (355) 68.8 0.0688 E16.5 retina GCTGTTCAAA (4) 7.2 0.0072 E16.5 retina CCTTTGATCC (22) 3.6 0.0036 E16.5 retina GTGGCTCACC (9) 3.6 0.0036 E16.5 retina GTTGAAAAAA (2) 3.6 0.0036 E16.5 retina CGTGCACACA (2) 1.8 0.0018 E18.5 retina GCTGTTCAAA (4) 27.3 0.0273 E18.5 retina CCTTTAATCC (355) 23.6 0.0236 E18.5 retina GTGGCTCACC (9) 9.1 0.0091 E18.5 retina AAATAGCTGG (2) 3.6 0.0036 E18.5 retina GATGTTCAAA (3) 3.6 0.0036 E18.5 retina CCTTTGATCC (22) 1.8 0.0018 P0.5 retina CCTTTAATCC (355) 72.6 0.0726 P0.5 retina GCTGTTCAAA (4) 5.9 0.0059 P0.5 retina GTGGCTCACC (9) 5.9 0.0059 P0.5 retina AAATAGCTGG (2) 3.9 0.0039 P0.5 retina CCTTTGATCC (22) 2 0.002 P0.5 retina GCAAGGAACA (14) 2 0.002 P0.5 retina GTTGAAAAAA (2) 2 0.002 P0.5 retina TTCATTTAGA (4) 2 0.002 P0.5 retina TTTCCCAGAA (2) 2 0.002 P0.5 retina TTTGACTTTT (3) 2 0.002 P2.5 retina CCTTTAATCC (355) 70.4 0.0704 P2.5 retina GCTGTTCAAA (4) 10.6 0.0106 P2.5 retina CCTTTGATCC (22) 7 0.007 P2.5 retina GTTGAAAAAA (2) 3.5 0.0035 P2.5 retina AAATAGCTGG (2) 1.8 0.0018 P2.5 retina GAACCTAAGC (2) 1.8 0.0018 P2.5 retina GTGGCTCACC (9) 1.8 0.0018 P4.5 retina CCTTTAATCC (355) 43.6 0.0436 P4.5 retina GTGGCTCACC (9) 7.9 0.0079 P4.5 retina CCTTTGATCC (22) 5.9 0.0059 P4.5 retina GCTGTTCAAA (4) 5.9 0.0059 P4.5 retina AAATAGCTGG (2) 2 0.002 P4.5 retina CGTGCACACA (2) 2 0.002 P4.5 retina GATGTTCAAA (3) 2 0.002 P4.5 retina GTTGAAAAAA (2) 2 0.002 P4.5 retina TTCATTTAGA (4) 2 0.002 P6.5 retina CCTTTAATCC (355) 70 0.07 P6.5 retina GCTGTTCAAA (4) 15 0.015 P6.5 retina GTGGCTCACC (9) 6.7 0.0067 P6.5 retina AAATAGCTGG (2) 3.3 0.0033 P6.5 retina CCTTTGATCC (22) 3.3 0.0033 P10.5 crx- retina CCTTTAATCC (355) 63.2 0.0632 P10.5 crx- retina GCTGTTCAAA (4) 9.3 0.0093 P10.5 crx- retina AAATAGCTGG (2) 3.7 0.0037 P10.5 crx- retina GCAAGGAACA (14) 3.7 0.0037 P10.5 crx- retina GTGGCTCACC (9) 3.7 0.0037 P10.5 crx- retina CGTGCACACA (2) 1.9 0.0019 P10.5 crx+ retina CCTTTAATCC (355) 38.4 0.0384 P10.5 crx+ retina GCTGTTCAAA (4) 11.5 0.0115 P10.5 crx+ retina CCTTTGATCC (22) 5.8 0.0058 P10.5 crx+ retina CGTGCACACA (2) 1.9 0.0019 P10.5 crx+ retina GTGGCTCACC (9) 1.9 0.0019 P10.5 crx+ retina TTTGACTTTT (3) 1.9 0.0019 Adult retinal CCTTTAATCC (355) 129.6 0.1296 Adult retinal GCTGTTCAAA (4) 9.3 0.0093 Adult retinal GTGGCTCACC (9) 5.6 0.0056 Adult retinal CGTGCACACA (2) 1.9 0.0019 Adult retinal GCAAGGAACA (14) 1.9 0.0019 Adult retinal GTTGAAAAAA (2) 1.9 0.0019 ONL CCTTTAATCC (355) 84.3 0.0843 ONL GCTGTTCAAA (4) 13.4 0.0134 ONL GTGGCTCACC (9) 9.6 0.0096 ONL CCTTTGATCC (22) 5.7 0.0057 ONL AAATAGCTGG (2) 1.9 0.0019 ONL GCAAGGAACA (14) 1.9 0.0019 ONL TTTCCCAGAA (2) 1.9 0.0019