Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.293599	Comt	catechol-O-methyltransferase	16	16 11.2 cM	12846
Mm.293599	Arvcf	armadillo repeat gene deleted in velo-cardio-facial syndrome	16	16 11.18 cM	11877
Gene Ontology	calcium-dependent cell-cell adhesion | cell adhesion | cytoplasm | cytoskeleton | nucleus | plasma membrane | protein binding | structural molecule activity
Human Homolog	ARVCF[armadillo repeat gene deletes in velocardiofacial syndrome]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 116 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGTTGCTGG (369) 68.5 0.0685 P8 Cb GC CCTTTAATCC (355) 52.2 0.0522 P8 Cb GC CTTGTTTAGT (3) 6.5 0.0065 P8 Cb GC AGCAGTGGTG (7) 1.6 0.0016 P8 Cb GC CGCCATCATA (4) 1.6 0.0016 P8 Cb GC TTGCCCTGCA (4) 1.6 0.0016 Cb medulloblastoma TGGTTGCTGG (369) 113.3 0.1133 Cb medulloblastoma CCTTTAATCC (355) 41.6 0.0416 Cb medulloblastoma AGCAGTGGTG (7) 4.6 0.0046 Cb medulloblastoma CTTGTTTAGT (3) 2.3 0.0023 Cb medulloblastoma GAGAGTTGGC (7) 2.3 0.0023 P8 GC+1d culture TGGTTGCTGG (369) 57.1 0.0571 P8 GC+1d culture CCTTTAATCC (355) 32 0.032 P8 GC+1d culture CTTGTTTAGT (3) 6.8 0.0068 P8 GC+1d culture CATTTAATCC (9) 1.1 0.0011 P8 GC+1d culture GAGAGTTGGC (7) 1.1 0.0011 P8 GC+1d culture TAGGCTGACC (3) 1.1 0.0011 P8 GC+SHH+1d culture TGGTTGCTGG (369) 89 0.089 P8 GC+SHH+1d culture CCTTTAATCC (355) 25.8 0.0258 P8 GC+SHH+1d culture CTTGTTTAGT (3) 8.2 0.0082 P8 GC+SHH+1d culture GCTTTAATCC (11) 3.5 0.0035 P8 GC+SHH+1d culture AGCAGTGGTG (7) 1.2 0.0012 P8 GC+SHH+1d culture CAAACCACTA (3) 1.2 0.0012 3T3 fibroblasts TGGTTGCTGG (369) 220.8 0.2208 3T3 fibroblasts CCTTTAATCC (355) 70.1 0.0701 3T3 fibroblasts TTGCCCTGCA (4) 10.5 0.0105 3T3 fibroblasts CAAACCACTA (3) 7 0.007 3T3 fibroblasts AGCAGTGGTG (7) 3.5 0.0035 3T3 fibroblasts CGCCATCATA (4) 3.5 0.0035 3T3 fibroblasts GAGAGTTGGC (7) 3.5 0.0035 E15 cortex TGGTTGCTGG (369) 277.1 0.2771 E15 cortex CCTTTAATCC (355) 54.4 0.0544 P1 cortex CCTTTAATCC (355) 154.5 0.1545 P1 cortex TGGTTGCTGG (369) 86.4 0.0864 P1 cortex CGCCATCATA (4) 4.5 0.0045 P1 cortex GCCAACACCT (5) 4.5 0.0045 P1 cortex GCTTTAATCC (11) 4.5 0.0045 P1 cortex TAGGCTGACC (3) 4.5 0.0045 Hypothalamus TGGTTGCTGG (369) 349.6 0.3496 Hypothalamus CCTTTAATCC (355) 19.9 0.0199 Hypothalamus CAAACCACTA (3) 3.6 0.0036 Hypothalamus AGCAGTGGTG (7) 1.8 0.0018 Hypothalamus CGCCATCATA (4) 1.8 0.0018 E12.5 retina TGGTTGCTGG (369) 157.7 0.1577 E12.5 retina CCTTTAATCC (355) 75.1 0.0751 E12.5 retina CGCCATCATA (4) 3.8 0.0038 E12.5 retina AGCAGTGGTG (7) 1.9 0.0019 E12.5 retina CAAACCACTA (3) 1.9 0.0019 E12.5 retina CATTTAATCC (9) 1.9 0.0019 E12.5 retina GCCAACACCT (5) 1.9 0.0019 E12.5 retina TTGCCCTGCA (4) 1.9 0.0019 E14.5 retina TGGTTGCTGG (369) 936.5 0.9365 E14.5 retina CCTTTAATCC (355) 120.3 0.1203 E14.5 retina CGCCATCATA (4) 7.3 0.0073 E14.5 retina GCTTTAATCC (11) 1.8 0.0018 E16.5 retina TGGTTGCTGG (369) 767.9 0.7679 E16.5 retina CCTTTAATCC (355) 68.8 0.0688 E16.5 retina CGCCATCATA (4) 7.2 0.0072 E16.5 retina CTTGTTTAGT (3) 3.6 0.0036 E16.5 retina CATTTAATCC (9) 1.8 0.0018 E16.5 retina GCCAACACCT (5) 1.8 0.0018 E18.5 retina TGGTTGCTGG (369) 252.8 0.2528 E18.5 retina CCTTTAATCC (355) 23.6 0.0236 E18.5 retina CGCCATCATA (4) 12.7 0.0127 E18.5 retina CAAACCACTA (3) 1.8 0.0018 E18.5 retina TAGGCTGACC (3) 1.8 0.0018 E18.5 retina TTGCCCTGCA (4) 1.8 0.0018 P0.5 retina TGGTTGCTGG (369) 190.4 0.1904 P0.5 retina CCTTTAATCC (355) 72.6 0.0726 P0.5 retina CGCCATCATA (4) 11.8 0.0118 P0.5 retina TAGGCTGACC (3) 3.9 0.0039 P0.5 retina CTTGTTTAGT (3) 2 0.002 P0.5 retina GCTTTAATCC (11) 2 0.002 P2.5 retina TGGTTGCTGG (369) 165.4 0.1654 P2.5 retina CCTTTAATCC (355) 70.4 0.0704 P2.5 retina CGCCATCATA (4) 12.3 0.0123 P2.5 retina AGCAGTGGTG (7) 5.3 0.0053 P2.5 retina GCTTTAATCC (11) 3.5 0.0035 P2.5 retina CTTGTTTAGT (3) 1.8 0.0018 P4.5 retina TGGTTGCTGG (369) 150.6 0.1506 P4.5 retina CCTTTAATCC (355) 43.6 0.0436 P4.5 retina CGCCATCATA (4) 9.9 0.0099 P4.5 retina GCTTTAATCC (11) 4 0.004 P4.5 retina CAAACCACTA (3) 2 0.002 P4.5 retina TAGGCTGACC (3) 2 0.002 P6.5 retina TGGTTGCTGG (369) 156.7 0.1567 P6.5 retina CCTTTAATCC (355) 70 0.07 P6.5 retina CGCCATCATA (4) 5 0.005 P6.5 retina CTTGTTTAGT (3) 5 0.005 P6.5 retina AGCAGTGGTG (7) 1.7 0.0017 P6.5 retina GCTTTAATCC (11) 1.7 0.0017 P10.5 crx- retina TGGTTGCTGG (369) 280.5 0.2805 P10.5 crx- retina CCTTTAATCC (355) 63.2 0.0632 P10.5 crx- retina CGCCATCATA (4) 5.6 0.0056 P10.5 crx- retina AGCAGTGGTG (7) 1.9 0.0019 P10.5 crx- retina CAAACCACTA (3) 1.9 0.0019 P10.5 crx+ retina TGGTTGCTGG (369) 101.9 0.1019 P10.5 crx+ retina CCTTTAATCC (355) 38.4 0.0384 P10.5 crx+ retina AGCAGTGGTG (7) 5.8 0.0058 P10.5 crx+ retina CGCCATCATA (4) 5.8 0.0058 P10.5 crx+ retina GCTTTAATCC (11) 3.8 0.0038 P10.5 crx+ retina TTGCCCTGCA (4) 3.8 0.0038 Adult retinal TGGTTGCTGG (369) 214.8 0.2148 Adult retinal CCTTTAATCC (355) 129.6 0.1296 Adult retinal CGCCATCATA (4) 7.4 0.0074 Adult retinal AGCAGTGGTG (7) 5.6 0.0056 Adult retinal CAAACCACTA (3) 1.9 0.0019 Adult retinal CTTGTTTAGT (3) 1.9 0.0019 Adult retinal GCTTTAATCC (11) 1.9 0.0019 ONL TGGTTGCTGG (369) 398.4 0.3984 ONL CCTTTAATCC (355) 84.3 0.0843 ONL AGCAGTGGTG (7) 5.7 0.0057 ONL CGCCATCATA (4) 3.8 0.0038 ONL CTTGTTTAGT (3) 3.8 0.0038 ONL GCTTTAATCC (11) 1.9 0.0019 ONL TAGGCTGACC (3) 1.9 0.0019