Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.294753	Litaf	LPS-induced TN factor	16	16 A1	56722
Gene Ontology	biological_process unknown | cellular_component unknown | protein binding
Human Homolog	LITAF[lipopolysaccharide-induced TNF factor]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 5 In Situ Hybridization Images

Images -- Click to Enlarge

SAGE Tags

Total 78 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCTCTCCAGC (7) 57.1 0.0571 P8 Cb GC CAAACTTCTG (2) 3.3 0.0033 P8 Cb GC ACTTTGATAT 1.6 0.0016 P8 Cb GC ATTTCAGTTT (6) 1.6 0.0016 P8 Cb GC TTACCCCACT (4) 1.6 0.0016 Cb medulloblastoma GCTCTCCAGC (7) 161.9 0.1619 Cb medulloblastoma CAAACTTCTG (2) 16.2 0.0162 Cb medulloblastoma GTGCAGTTAA (3) 4.6 0.0046 P8 GC+1d culture GCTCTCCAGC (7) 69.6 0.0696 P8 GC+1d culture ACTTTGATAT 8 0.008 P8 GC+1d culture CAAACTTCTG (2) 8 0.008 P8 GC+1d culture TTACCCCACT (4) 5.7 0.0057 P8 GC+1d culture GTCTCCCACA (2) 3.4 0.0034 P8 GC+1d culture AGCAGCGTCT (2) 1.1 0.0011 P8 GC+1d culture CCTTGGAAAG (4) 1.1 0.0011 P8 GC+SHH+1d culture GCTCTCCAGC (7) 74.9 0.0749 P8 GC+SHH+1d culture CAAACTTCTG (2) 5.9 0.0059 P8 GC+SHH+1d culture ACTTTGATAT 4.7 0.0047 P8 GC+SHH+1d culture TGGAGCTTTG (3) 1.2 0.0012 3T3 fibroblasts GCTCTCCAGC (7) 28 0.028 3T3 fibroblasts ACTTTGATAT 3.5 0.0035 E15 cortex GCTCTCCAGC (7) 69.3 0.0693 E15 cortex ACTTTGATAT 4.9 0.0049 E15 cortex CAAACTTCTG (2) 4.9 0.0049 P1 cortex GCTCTCCAGC (7) 54.5 0.0545 P1 cortex CAAACTTCTG (2) 9.1 0.0091 P1 cortex TGGAGCTTTG (3) 4.5 0.0045 Hypothalamus GCTCTCCAGC (7) 77.9 0.0779 Hypothalamus CAAACTTCTG (2) 7.2 0.0072 Hypothalamus ACTTTGATAT 1.8 0.0018 E12.5 retina GCTCTCCAGC (7) 50.7 0.0507 E12.5 retina ACTTTGATAT 3.8 0.0038 E12.5 retina CAAACTTCTG (2) 3.8 0.0038 E12.5 retina CCTTGGAAAG (4) 1.9 0.0019 E14.5 retina GCTCTCCAGC (7) 72.9 0.0729 E14.5 retina ATTTCAGTTT (6) 9.1 0.0091 E14.5 retina CCTTGGAAAG (4) 5.5 0.0055 E14.5 retina CAAACTTCTG (2) 3.6 0.0036 E14.5 retina ACTTTGATAT 1.8 0.0018 E16.5 retina GCTCTCCAGC (7) 97.8 0.0978 E16.5 retina CAAACTTCTG (2) 7.2 0.0072 E16.5 retina CCTTGGAAAG (4) 1.8 0.0018 E18.5 retina GCTCTCCAGC (7) 125.5 0.1255 E18.5 retina CAAACTTCTG (2) 12.7 0.0127 E18.5 retina CCTTGGAAAG (4) 3.6 0.0036 E18.5 retina ACTTTGATAT 1.8 0.0018 P0.5 retina GCTCTCCAGC (7) 66.7 0.0667 P0.5 retina CAAACTTCTG (2) 5.9 0.0059 P0.5 retina ACTTTGATAT 2 0.002 P0.5 retina GTCTCCCACA (2) 2 0.002 P0.5 retina GTGCAGTTAA (3) 2 0.002 P0.5 retina TGGAGCTTTG (3) 2 0.002 P2.5 retina GCTCTCCAGC (7) 75.7 0.0757 P2.5 retina CAAACTTCTG (2) 5.3 0.0053 P2.5 retina CCTTGGAAAG (4) 3.5 0.0035 P2.5 retina TGGAGCTTTG (3) 1.8 0.0018 P4.5 retina GCTCTCCAGC (7) 65.4 0.0654 P4.5 retina ACTTTGATAT 2 0.002 P4.5 retina CCTTGGAAAG (4) 2 0.002 P6.5 retina GCTCTCCAGC (7) 81.7 0.0817 P6.5 retina CAAACTTCTG (2) 3.3 0.0033 P6.5 retina GTCTCCCACA (2) 3.3 0.0033 P6.5 retina CCTTGGAAAG (4) 1.7 0.0017 P10.5 crx- retina GCTCTCCAGC (7) 55.7 0.0557 P10.5 crx- retina CAAACTTCTG (2) 5.6 0.0056 P10.5 crx- retina TGGAGCTTTG (3) 1.9 0.0019 P10.5 crx+ retina GCTCTCCAGC (7) 94.2 0.0942 P10.5 crx+ retina CAAACTTCTG (2) 7.7 0.0077 P10.5 crx+ retina ACTTTGATAT 1.9 0.0019 P10.5 crx+ retina GTGCAGTTAA (3) 1.9 0.0019 Adult retinal GCTCTCCAGC (7) 57.4 0.0574 Adult retinal ACTTTGATAT 3.7 0.0037 Adult retinal AGCAGCGTCT (2) 3.7 0.0037 Adult retinal CAAACTTCTG (2) 3.7 0.0037 Adult retinal GTCTCCCACA (2) 3.7 0.0037 Adult retinal TTACCCCACT (4) 1.9 0.0019 ONL GCTCTCCAGC (7) 28.7 0.0287 ONL CAAACTTCTG (2) 9.6 0.0096