Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.295397	Depdc6	DEP domain containing 6	15	15 6.7 cM	97998
Gene Ontology	intracellular signaling cascade
Human Homolog	DEPDC6[DEP domain containing 6]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 102 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAATAAATGT (9) 11.4 0.0114 P8 Cb GC CCTCACTGGT (3) 8.2 0.0082 P8 Cb GC TCTCGAAAAA (5) 3.3 0.0033 P8 Cb GC TTGGTAATTT (4) 3.3 0.0033 P8 Cb GC TAGCCCAGGC (30) 1.6 0.0016 P8 Cb GC TGAGCCCCTG (5) 1.6 0.0016 Cb medulloblastoma AAATAAATGT (9) 9.2 0.0092 Cb medulloblastoma TAGCCCAGGC (30) 4.6 0.0046 Cb medulloblastoma CCTCACTGGT (3) 2.3 0.0023 Cb medulloblastoma CCTGTCTCCC (5) 2.3 0.0023 Cb medulloblastoma TGTCTAACAA 2.3 0.0023 P8 GC+1d culture CCTCACTGGT (3) 9.1 0.0091 P8 GC+1d culture AAATAAATGT (9) 8 0.008 P8 GC+1d culture TCTCGAAAAA (5) 2.3 0.0023 P8 GC+1d culture TGAGCCCCTG (5) 2.3 0.0023 P8 GC+1d culture CAGCTAATTA (2) 1.1 0.0011 P8 GC+1d culture CCTGTCTCCC (5) 1.1 0.0011 P8 GC+1d culture TAGCCCAGGC (30) 1.1 0.0011 P8 GC+1d culture TGTCTAACAA 1.1 0.0011 P8 GC+SHH+1d culture TAGCCCAGGC (30) 8.2 0.0082 P8 GC+SHH+1d culture AAATAAATGT (9) 4.7 0.0047 P8 GC+SHH+1d culture CCTCACTGGT (3) 3.5 0.0035 P8 GC+SHH+1d culture TCTCGAAAAA (5) 2.3 0.0023 P8 GC+SHH+1d culture TGAGCCCCTG (5) 2.3 0.0023 P8 GC+SHH+1d culture CCTGTCTCCC (5) 1.2 0.0012 P8 GC+SHH+1d culture TGTCTAACAA 1.2 0.0012 3T3 fibroblasts TAGCCCAGGC (30) 14 0.014 3T3 fibroblasts TGAGCCCCTG (5) 14 0.014 3T3 fibroblasts CCTCACTGGT (3) 7 0.007 3T3 fibroblasts CCTGTCTCCC (5) 3.5 0.0035 E15 cortex TAGCCCAGGC (30) 24.7 0.0247 E15 cortex CCTCACTGGT (3) 9.9 0.0099 E15 cortex TCTCGAAAAA (5) 4.9 0.0049 P1 cortex CCTCACTGGT (3) 9.1 0.0091 Hypothalamus AAATAAATGT (9) 23.5 0.0235 Hypothalamus TAGCCCAGGC (30) 7.2 0.0072 Hypothalamus CCTCACTGGT (3) 3.6 0.0036 Hypothalamus CAGCTAATTA (2) 1.8 0.0018 Hypothalamus TGAGCCCCTG (5) 1.8 0.0018 Hypothalamus TGTCTAACAA 1.8 0.0018 Hypothalamus TTGGTAATTT (4) 1.8 0.0018 E12.5 retina TAGCCCAGGC (30) 7.5 0.0075 E12.5 retina AAATAAATGT (9) 5.6 0.0056 E12.5 retina CCACATCCAG 3.8 0.0038 E12.5 retina TCTCGAAAAA (5) 3.8 0.0038 E12.5 retina TGAGCCCCTG (5) 1.9 0.0019 E14.5 retina TAGCCCAGGC (30) 12.8 0.0128 E14.5 retina AAATAAATGT (9) 5.5 0.0055 E14.5 retina TCTCGAAAAA (5) 5.5 0.0055 E14.5 retina CACACCACAC (9) 1.8 0.0018 E14.5 retina CCTCACTGGT (3) 1.8 0.0018 E14.5 retina TGAGCCCCTG (5) 1.8 0.0018 E14.5 retina TTGGTAATTT (4) 1.8 0.0018 E16.5 retina AAATAAATGT (9) 9.1 0.0091 E16.5 retina TAGCCCAGGC (30) 7.2 0.0072 E16.5 retina CCTCACTGGT (3) 5.4 0.0054 E16.5 retina TTGGTAATTT (4) 5.4 0.0054 E18.5 retina AAATAAATGT (9) 10.9 0.0109 E18.5 retina TAGCCCAGGC (30) 7.3 0.0073 E18.5 retina TTGGTAATTT (4) 3.6 0.0036 E18.5 retina CCACATCCAG 1.8 0.0018 E18.5 retina CCTCACTGGT (3) 1.8 0.0018 P0.5 retina CCTCACTGGT (3) 5.9 0.0059 P0.5 retina TAGCCCAGGC (30) 5.9 0.0059 P2.5 retina TAGCCCAGGC (30) 8.8 0.0088 P2.5 retina CCTCACTGGT (3) 3.5 0.0035 P2.5 retina TGAGCCCCTG (5) 3.5 0.0035 P2.5 retina AAATAAATGT (9) 1.8 0.0018 P2.5 retina CACACCACAC (9) 1.8 0.0018 P2.5 retina CCTGTCTCCC (5) 1.8 0.0018 P2.5 retina TCTCGAAAAA (5) 1.8 0.0018 P2.5 retina TTGGTAATTT (4) 1.8 0.0018 P4.5 retina AAATAAATGT (9) 4 0.004 P4.5 retina TAGCCCAGGC (30) 2 0.002 P4.5 retina TCTCGAAAAA (5) 2 0.002 P4.5 retina TTGGTAATTT (4) 2 0.002 P6.5 retina AAATAAATGT (9) 8.3 0.0083 P6.5 retina TAGCCCAGGC (30) 5 0.005 P6.5 retina CACACCACAC (9) 1.7 0.0017 P6.5 retina CCTGTCTCCC (5) 1.7 0.0017 P10.5 crx- retina CCTCACTGGT (3) 11.1 0.0111 P10.5 crx- retina TGAGCCCCTG (5) 5.6 0.0056 P10.5 crx- retina AAATAAATGT (9) 3.7 0.0037 P10.5 crx- retina CCACATCCAG 1.9 0.0019 P10.5 crx- retina CCTGTCTCCC (5) 1.9 0.0019 P10.5 crx- retina TAGCCCAGGC (30) 1.9 0.0019 P10.5 crx+ retina AAATAAATGT (9) 7.7 0.0077 P10.5 crx+ retina CCTCACTGGT (3) 3.8 0.0038 P10.5 crx+ retina TAGCCCAGGC (30) 3.8 0.0038 P10.5 crx+ retina TGAGCCCCTG (5) 3.8 0.0038 P10.5 crx+ retina CAGCTAATTA (2) 1.9 0.0019 Adult retinal CCTCACTGGT (3) 5.6 0.0056 Adult retinal AAATAAATGT (9) 3.7 0.0037 Adult retinal CCTGTCTCCC (5) 3.7 0.0037 Adult retinal CCACATCCAG 1.9 0.0019 Adult retinal TAGCCCAGGC (30) 1.9 0.0019 Adult retinal TCTCGAAAAA (5) 1.9 0.0019 ONL TAGCCCAGGC (30) 9.6 0.0096 ONL AAATAAATGT (9) 3.8 0.0038 ONL CCACATCCAG 1.9 0.0019 ONL TGAGCCCCTG (5) 1.9 0.0019 ONL TTGGTAATTT (4) 1.9 0.0019