Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.297096	Mdh2	malate dehydrogenase 2, NAD (mitochondrial)	5	5 78.0 cM	17448
Gene Ontology	L-malate dehydrogenase activity | malate dehydrogenase activity | malic enzyme activity | mitochondrion | mitochondrion | oxidoreductase activity | tricarboxylic acid cycle
Human Homolog	MDH2[malate dehydrogenase 2, NAD (mitochondrial)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 131 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAGGTGGAAG (5) 94.6 0.0946 P8 Cb GC TCTTTGGAAC 35.9 0.0359 P8 Cb GC GAACGGGGAA (2) 13.1 0.0131 P8 Cb GC TCCTGAACCC (4) 13.1 0.0131 P8 Cb GC CTGGCCGCTC (2) 1.6 0.0016 P8 Cb GC TCCTGGAAGC (4) 1.6 0.0016 P8 Cb GC TGTACCCCCA (2) 1.6 0.0016 Cb medulloblastoma TCTTTGGAAC 37 0.037 Cb medulloblastoma AAGGTGGAAG (5) 27.7 0.0277 Cb medulloblastoma GAACGGGGAA (2) 13.9 0.0139 Cb medulloblastoma AACGGGAAGG (2) 2.3 0.0023 Cb medulloblastoma TTCTTGACAA 2.3 0.0023 P8 GC+1d culture AAGGTGGAAG (5) 97 0.097 P8 GC+1d culture GAACGGGGAA (2) 41.1 0.0411 P8 GC+1d culture TCTTTGGAAC 34.2 0.0342 P8 GC+1d culture TCCTGAACCC (4) 10.3 0.0103 P8 GC+1d culture AACGGGAAGG (2) 1.1 0.0011 P8 GC+1d culture AAGTGAGAGG (3) 1.1 0.0011 P8 GC+1d culture GCGTCCACGA (2) 1.1 0.0011 P8 GC+1d culture TATTTGGAAC (6) 1.1 0.0011 P8 GC+1d culture TGTACCCCCA (2) 1.1 0.0011 P8 GC+SHH+1d culture AAGGTGGAAG (5) 92.5 0.0925 P8 GC+SHH+1d culture GAACGGGGAA (2) 69.1 0.0691 P8 GC+SHH+1d culture TCTTTGGAAC 26.9 0.0269 P8 GC+SHH+1d culture TCCTGAACCC (4) 5.9 0.0059 P8 GC+SHH+1d culture TATTTGGAAC (6) 3.5 0.0035 P8 GC+SHH+1d culture CCCCCCTCCC (6) 1.2 0.0012 P8 GC+SHH+1d culture CTGGCCGCTC (2) 1.2 0.0012 P8 GC+SHH+1d culture TCCTGGAAGC (4) 1.2 0.0012 P8 GC+SHH+1d culture TCTGTGGAAC (4) 1.2 0.0012 P8 GC+SHH+1d culture TGTACCCCCA (2) 1.2 0.0012 P8 GC+SHH+1d culture TTCTTGACAA 1.2 0.0012 P8 GC+SHH+1d culture TTTTTGGAAC (3) 1.2 0.0012 3T3 fibroblasts AAGGTGGAAG (5) 101.6 0.1016 3T3 fibroblasts TCATTGGAAC (2) 21 0.021 3T3 fibroblasts TTCTTGACAA 3.5 0.0035 E15 cortex AAGGTGGAAG (5) 39.6 0.0396 E15 cortex TCTTTGGAAC 14.8 0.0148 E15 cortex TCCTGAACCC (4) 4.9 0.0049 P1 cortex AAGGTGGAAG (5) 31.8 0.0318 P1 cortex TCCTGAACCC (4) 13.6 0.0136 P1 cortex TCTTTGGAAC 13.6 0.0136 P1 cortex TATTTGGAAC (6) 9.1 0.0091 Hypothalamus GAACGGGGAA (2) 39.8 0.0398 Hypothalamus TCTTTGGAAC 29 0.029 Hypothalamus AAGGTGGAAG (5) 23.5 0.0235 Hypothalamus TCCTGAACCC (4) 7.2 0.0072 Hypothalamus AAGTGAGAGG (3) 1.8 0.0018 Hypothalamus ATGCTGAATA (2) 1.8 0.0018 Hypothalamus CTGGCCGCTC (2) 1.8 0.0018 Hypothalamus TATTTGGAAC (6) 1.8 0.0018 Hypothalamus TTCTTGACAA 1.8 0.0018 E12.5 retina AAGGTGGAAG (5) 200.9 0.2009 E12.5 retina TCTTTGGAAC 18.8 0.0188 E12.5 retina TCCTGAACCC (4) 9.4 0.0094 E12.5 retina TGTACCCCCA (2) 5.6 0.0056 E14.5 retina AAGGTGGAAG (5) 63.8 0.0638 E14.5 retina TCCTGAACCC (4) 16.4 0.0164 E14.5 retina TCTTTGGAAC 14.6 0.0146 E14.5 retina ATGCTGAATA (2) 3.6 0.0036 E14.5 retina CTCCCAGCGT (4) 1.8 0.0018 E16.5 retina AAGGTGGAAG (5) 108.7 0.1087 E16.5 retina TCTTTGGAAC 30.8 0.0308 E16.5 retina TCCTGAACCC (4) 14.5 0.0145 E16.5 retina CTCCCAGCGT (4) 7.2 0.0072 E16.5 retina ATGCTGAATA (2) 5.4 0.0054 E16.5 retina CCCCCCTCCC (6) 3.6 0.0036 E16.5 retina TATTTGGAAC (6) 1.8 0.0018 E16.5 retina TCTTTGGACC 1.8 0.0018 E18.5 retina AAGGTGGAAG (5) 47.3 0.0473 E18.5 retina TCCTGAACCC (4) 32.7 0.0327 E18.5 retina TCTTTGGAAC 16.4 0.0164 E18.5 retina CCCCCCTCCC (6) 1.8 0.0018 E18.5 retina TGTACCCCCA (2) 1.8 0.0018 P0.5 retina AAGGTGGAAG (5) 96.2 0.0962 P0.5 retina TCTTTGGAAC 25.5 0.0255 P0.5 retina TCCTGAACCC (4) 7.9 0.0079 P0.5 retina CTCCCAGCGT (4) 2 0.002 P0.5 retina CTGGCCGCTC (2) 2 0.002 P0.5 retina GCGTCCACGA (2) 2 0.002 P0.5 retina TCCTGGAAGC (4) 2 0.002 P0.5 retina TCTGTGGAAC (4) 2 0.002 P2.5 retina AAGGTGGAAG (5) 58.1 0.0581 P2.5 retina TCTTTGGAAC 22.9 0.0229 P2.5 retina TCCTGAACCC (4) 15.8 0.0158 P2.5 retina TCTGTGGAAC (4) 1.8 0.0018 P2.5 retina TGTACCCCCA (2) 1.8 0.0018 P4.5 retina AAGGTGGAAG (5) 43.6 0.0436 P4.5 retina TCTTTGGAAC 15.9 0.0159 P4.5 retina TCCTGAACCC (4) 7.9 0.0079 P4.5 retina ATGCTGAATA (2) 4 0.004 P4.5 retina TATTTGGAAC (6) 4 0.004 P4.5 retina TGTACCCCCA (2) 4 0.004 P6.5 retina AAGGTGGAAG (5) 48.4 0.0484 P6.5 retina TCTTTGGAAC 21.7 0.0217 P6.5 retina TCCTGAACCC (4) 10 0.01 P6.5 retina AACGGGAAGG (2) 1.7 0.0017 P6.5 retina CTCCCAGCGT (4) 1.7 0.0017 P6.5 retina TATTTGGAAC (6) 1.7 0.0017 P10.5 crx- retina AAGGTGGAAG (5) 157.9 0.1579 P10.5 crx- retina TCTTTGGAAC 74.3 0.0743 P10.5 crx- retina TCCTGAACCC (4) 5.6 0.0056 P10.5 crx- retina AAGTGAGAGG (3) 3.7 0.0037 P10.5 crx- retina ATGCTGAATA (2) 1.9 0.0019 P10.5 crx- retina GAACGGGGAA (2) 1.9 0.0019 P10.5 crx- retina TCTTTGGACC 1.9 0.0019 P10.5 crx+ retina AAGGTGGAAG (5) 57.7 0.0577 P10.5 crx+ retina TCTTTGGAAC 25 0.025 P10.5 crx+ retina TCCTGAACCC (4) 3.8 0.0038 P10.5 crx+ retina AACGGGAAGG (2) 1.9 0.0019 P10.5 crx+ retina AAGTGAGAGG (3) 1.9 0.0019 P10.5 crx+ retina CTGGCCGCTC (2) 1.9 0.0019 P10.5 crx+ retina TGTACCCCCA (2) 1.9 0.0019 P10.5 crx+ retina TTCTTGACAA 1.9 0.0019 Adult retinal TCTTTGGAAC 25.9 0.0259 Adult retinal AAGGTGGAAG (5) 18.5 0.0185 Adult retinal AACGGGAAGG (2) 13 0.013 Adult retinal CCCCCCTCCC (6) 1.9 0.0019 Adult retinal CTCCCAGCGT (4) 1.9 0.0019 Adult retinal CTGGCCGCTC (2) 1.9 0.0019 Adult retinal GCGTCCACGA (2) 1.9 0.0019 Adult retinal TCCTGAACCC (4) 1.9 0.0019 Adult retinal TCTTTGGACC 1.9 0.0019 Adult retinal TGTACCCCCA (2) 1.9 0.0019 ONL AAGGTGGAAG (5) 49.8 0.0498 ONL TCTTTGGAAC 11.5 0.0115 ONL AACGGGAAGG (2) 7.7 0.0077 ONL TCCTGAACCC (4) 3.8 0.0038 ONL CCCCCCTCCC (6) 1.9 0.0019 ONL TCTTTGGGAC (4) 1.9 0.0019 ONL TTTTTGGAAC (3) 1.9 0.0019