Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.297199
BC034054
cDNA sequence BC034054
11
11
217125
Human Homolog
LOC201191[hypothetical protein LOC201191]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
Total 8 In Situ Hybridization Images
Images -- Click to Enlarge
SAGE Tags
Total 60 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
TGAAGGGGGA
(
2
)
9.8
0.0098
P8 Cb GC
TCCTTTTGTA (
2
)
1.6
0.0016
Cb medulloblastoma
TGAAGGGGGA
(
2
)
20.8
0.0208
Cb medulloblastoma
CAGGTGGGCA (
2
)
2.3
0.0023
Cb medulloblastoma
TCCTTTTGTA (
2
)
2.3
0.0023
Cb medulloblastoma
TGGGCCACCT (
3
)
2.3
0.0023
P8 GC+1d culture
TGAAGGGGGA
(
2
)
11.4
0.0114
P8 GC+1d culture
TCCTTTTGTA (
2
)
2.3
0.0023
P8 GC+1d culture
GGCAGCAGGG
1.1
0.0011
P8 GC+SHH+1d culture
TGAAGGGGGA
(
2
)
18.7
0.0187
P8 GC+SHH+1d culture
TCCTTTTGTA (
2
)
4.7
0.0047
P8 GC+SHH+1d culture
GGCCTCACCA
1.2
0.0012
P8 GC+SHH+1d culture
GGTTTGGAAA (
6
)
1.2
0.0012
E15 cortex
TGAAGGGGGA
(
2
)
19.8
0.0198
P1 cortex
TGAAGGGGGA
(
2
)
9.1
0.0091
P1 cortex
TGGGCCACCT (
3
)
4.5
0.0045
Hypothalamus
TGAAGGGGGA
(
2
)
7.2
0.0072
E12.5 retina
TGAAGGGGGA
(
2
)
22.5
0.0225
E12.5 retina
CAGGTGGGCA (
2
)
1.9
0.0019
E12.5 retina
GGCCTCACCA
1.9
0.0019
E14.5 retina
TGAAGGGGGA
(
2
)
20
0.02
E14.5 retina
TCCTTTTGTA (
2
)
3.6
0.0036
E14.5 retina
CAGGTGGGCA (
2
)
1.8
0.0018
E16.5 retina
TGAAGGGGGA
(
2
)
14.5
0.0145
E16.5 retina
CAGGTGGGCA (
2
)
1.8
0.0018
E16.5 retina
TCCTTTTGTA (
2
)
1.8
0.0018
E18.5 retina
TGAAGGGGGA
(
2
)
25.5
0.0255
E18.5 retina
GGTTTGGAAA (
6
)
1.8
0.0018
P0.5 retina
TGAAGGGGGA
(
2
)
25.5
0.0255
P0.5 retina
GCCAGGATTC
(
3
)
2
0.002
P0.5 retina
GGCAGCAGGG
2
0.002
P0.5 retina
GGCCTCACCA
2
0.002
P0.5 retina
TCCTTTTGTA (
2
)
2
0.002
P2.5 retina
TGAAGGGGGA
(
2
)
51
0.051
P2.5 retina
TCCTTTTGTA (
2
)
3.5
0.0035
P4.5 retina
TGAAGGGGGA
(
2
)
47.6
0.0476
P4.5 retina
TCCTTTTGTA (
2
)
7.9
0.0079
P4.5 retina
CAGGTGGGCA (
2
)
4
0.004
P4.5 retina
CAGGTCCTGT
(
2
)
2
0.002
P4.5 retina
GCCAGGATTC
(
3
)
2
0.002
P4.5 retina
TTCACCACAA (
6
)
2
0.002
P6.5 retina
TGAAGGGGGA
(
2
)
28.3
0.0283
P6.5 retina
TCCTTTTGTA (
2
)
8.3
0.0083
P6.5 retina
GGCCTCACCA
5
0.005
P6.5 retina
CAGGTGGGCA (
2
)
1.7
0.0017
P6.5 retina
GGCAGCAGGG
1.7
0.0017
P6.5 retina
TGGGCCACCT (
3
)
1.7
0.0017
P10.5 crx- retina
TGAAGGGGGA
(
2
)
18.6
0.0186
P10.5 crx- retina
CAGGTCCTGT
(
2
)
3.7
0.0037
P10.5 crx- retina
CAGGTGGGCA (
2
)
1.9
0.0019
P10.5 crx- retina
GCCAGGATTC
(
3
)
1.9
0.0019
P10.5 crx- retina
TCCTTTTGTA (
2
)
1.9
0.0019
P10.5 crx+ retina
TGAAGGGGGA
(
2
)
28.8
0.0288
P10.5 crx+ retina
TCCTTTTGTA (
2
)
3.8
0.0038
P10.5 crx+ retina
GGTTTGGAAA (
6
)
1.9
0.0019
P10.5 crx+ retina
TTCACCACAA (
6
)
1.9
0.0019
Adult retinal
TGAAGGGGGA
(
2
)
16.7
0.0167
Adult retinal
TTCACCACAA (
6
)
1.9
0.0019
ONL
TGAAGGGGGA
(
2
)
5.7
0.0057
ONL
GGTTTGGAAA (
6
)
1.9
0.0019
