Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.2981	Vrk1	vaccinia related kinase 1	12		22367
Gene Ontology	ATP binding | kinase activity | protein amino acid phosphorylation | protein kinase activity | protein serine/threonine kinase activity | transferase activity
Human Homolog	VRK1[vaccinia related kinase 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 67 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GAAAAAAAAA (204) 45.7 0.0457 P8 Cb GC AAAATAAAAC (2) 9.8 0.0098 P8 Cb GC AAAAAATTGA (9) 3.3 0.0033 P8 Cb GC TGAGTCTTCT 1.6 0.0016 Cb medulloblastoma GAAAAAAAAA (204) 173.4 0.1734 Cb medulloblastoma GAAAAAAAAG (6) 2.3 0.0023 P8 GC+1d culture GAAAAAAAAA (204) 41.1 0.0411 P8 GC+1d culture AAAATAAAAC (2) 3.4 0.0034 P8 GC+1d culture GAAAAAAAAG (6) 1.1 0.0011 P8 GC+1d culture TGAGTCTTCT 1.1 0.0011 P8 GC+SHH+1d culture GAAAAAAAAA (204) 77.3 0.0773 P8 GC+SHH+1d culture AAAATAAAAC (2) 11.7 0.0117 P8 GC+SHH+1d culture AAAAAATTGA (9) 2.3 0.0023 P8 GC+SHH+1d culture GAAAAAAAAG (6) 2.3 0.0023 P8 GC+SHH+1d culture TGAGTCTTCT 2.3 0.0023 E15 cortex GAAAAAAAAA (204) 54.4 0.0544 E15 cortex AAAAAATTGA (9) 9.9 0.0099 P1 cortex GAAAAAAAAA (204) 45.5 0.0455 P1 cortex AAAAAATTGA (9) 22.7 0.0227 P1 cortex GAAAAAAAAG (6) 4.5 0.0045 Hypothalamus GAAAAAAAAA (204) 67 0.067 Hypothalamus AAAAAATTGA (9) 1.8 0.0018 Hypothalamus AAAATAAAAC (2) 1.8 0.0018 Hypothalamus GAAAAAAAAG (6) 1.8 0.0018 E12.5 retina GAAAAAAAAA (204) 46.9 0.0469 E12.5 retina AAAATAAAAC (2) 35.7 0.0357 E12.5 retina TGAGTCTTCT 11.3 0.0113 E12.5 retina GCCTCAGTGT (3) 1.9 0.0019 E14.5 retina GAAAAAAAAA (204) 34.6 0.0346 E14.5 retina AAAATAAAAC (2) 29.2 0.0292 E14.5 retina TGAGTCTTCT 3.6 0.0036 E16.5 retina AAAATAAAAC (2) 29 0.029 E16.5 retina GAAAAAAAAA (204) 23.5 0.0235 E16.5 retina TGAGTCTTCT 7.2 0.0072 E16.5 retina GCCTCAGTGT (3) 3.6 0.0036 E18.5 retina GAAAAAAAAA (204) 65.5 0.0655 E18.5 retina AAAATAAAAC (2) 41.8 0.0418 E18.5 retina AAAAAATTGA (9) 5.5 0.0055 E18.5 retina GAAAAAAAAG (6) 3.6 0.0036 E18.5 retina TGAGTCTTCT 1.8 0.0018 P0.5 retina GAAAAAAAAA (204) 35.3 0.0353 P0.5 retina AAAAAATTGA (9) 3.9 0.0039 P0.5 retina AAAATAAAAC (2) 3.9 0.0039 P0.5 retina TGAGTCTTCT 3.9 0.0039 P0.5 retina GAAAAAAAAG (6) 2 0.002 P2.5 retina GAAAAAAAAA (204) 86.2 0.0862 P2.5 retina AAAATAAAAC (2) 10.6 0.0106 P2.5 retina TGAGTCTTCT 7 0.007 P2.5 retina AAAAAATTGA (9) 1.8 0.0018 P2.5 retina GAAAAAAAAG (6) 1.8 0.0018 P2.5 retina GCCTCAGTGT (3) 1.8 0.0018 P4.5 retina GAAAAAAAAA (204) 51.5 0.0515 P4.5 retina AAAATAAAAC (2) 7.9 0.0079 P4.5 retina TGAGTCTTCT 5.9 0.0059 P4.5 retina AAAAAATTGA (9) 2 0.002 P4.5 retina GAAAAAAAAG (6) 2 0.002 P6.5 retina GAAAAAAAAA (204) 40 0.04 P6.5 retina AAAAAATTGA (9) 5 0.005 P6.5 retina AAAATAAAAC (2) 5 0.005 P6.5 retina GAAAAAAAAG (6) 1.7 0.0017 P6.5 retina TGAGTCTTCT 1.7 0.0017 P10.5 crx- retina GAAAAAAAAA (204) 16.7 0.0167 P10.5 crx- retina AAAAAATTGA (9) 7.4 0.0074 P10.5 crx+ retina GAAAAAAAAA (204) 42.3 0.0423 Adult retinal GAAAAAAAAA (204) 16.7 0.0167 Adult retinal AAAATAAAAC (2) 1.9 0.0019 ONL GAAAAAAAAA (204) 24.9 0.0249