Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.298274	Rapgef1	Rap guanine nucleotide exchange factor (GEF) 1	2		107746
Gene Ontology	blood vessel development | cell-cell adhesion | PDGF receptor signaling pathway | protein binding | SH3/SH2 adaptor protein activity | signal transducer activity
Human Homolog	RAPGEF1[Rap guanine nucleotide exchange factor (GEF) 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 53 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGTCTTTGG (6) 8.2 0.0082 P8 Cb GC CCTCCCAGTG (3) 6.5 0.0065 P8 Cb GC AAAACAAAAC (12) 1.6 0.0016 Cb medulloblastoma CCTCCCAGTG (3) 2.3 0.0023 P8 GC+1d culture CCTCCCAGTG (3) 10.3 0.0103 P8 GC+1d culture AATTGGGCAG (2) 1.1 0.0011 P8 GC+1d culture GATGTCCTCA (3) 1.1 0.0011 P8 GC+SHH+1d culture CCTCCCAGTG (3) 9.4 0.0094 P8 GC+SHH+1d culture AATTGGGCAG (2) 1.2 0.0012 P8 GC+SHH+1d culture AGCTGGGCAG (3) 1.2 0.0012 P8 GC+SHH+1d culture TGGTCTTTGG (6) 1.2 0.0012 3T3 fibroblasts AATTGGGCAG (2) 7 0.007 3T3 fibroblasts AGCTGGGCAG (3) 3.5 0.0035 E15 cortex AGCTGGGCAG (3) 9.9 0.0099 E15 cortex CCTCCCAGTG (3) 9.9 0.0099 P1 cortex GATGTCCTCA (3) 9.1 0.0091 Hypothalamus CCTCCCAGTG (3) 3.6 0.0036 Hypothalamus TGGTCTTTGG (6) 3.6 0.0036 Hypothalamus GACAGTTGGG (2) 1.8 0.0018 E12.5 retina AATTGGGCAG (2) 11.3 0.0113 E12.5 retina CCTCCCAGTG (3) 5.6 0.0056 E12.5 retina TGACTGTATA (5) 3.8 0.0038 E14.5 retina CCTCCCAGTG (3) 7.3 0.0073 E14.5 retina AATTGGGCAG (2) 3.6 0.0036 E14.5 retina GACAGTTGGG (2) 1.8 0.0018 E16.5 retina CCTCCCAGTG (3) 7.2 0.0072 E18.5 retina TGGTCTTTGG (6) 5.5 0.0055 E18.5 retina CCTCCCAGTG (3) 1.8 0.0018 P0.5 retina CCTCCCAGTG (3) 7.9 0.0079 P0.5 retina TGGTCTTTGG (6) 3.9 0.0039 P0.5 retina AAAACAAAAC (12) 2 0.002 P0.5 retina AATTGGGCAG (2) 2 0.002 P0.5 retina TGACTGTATA (5) 2 0.002 P2.5 retina CCTCCCAGTG (3) 8.8 0.0088 P2.5 retina TGACTGTATA (5) 3.5 0.0035 P2.5 retina AATTGGGCAG (2) 1.8 0.0018 P4.5 retina CCTCCCAGTG (3) 2 0.002 P6.5 retina CCTCCCAGTG (3) 6.7 0.0067 P6.5 retina AAAACAAAAC (12) 1.7 0.0017 P6.5 retina AATTGGGCAG (2) 1.7 0.0017 P6.5 retina TGGTCTTTGG (6) 1.7 0.0017 P10.5 crx- retina AAAACAAAAC (12) 1.9 0.0019 P10.5 crx- retina CCTCCCAGTG (3) 1.9 0.0019 P10.5 crx- retina GATGTCCTCA (3) 1.9 0.0019 P10.5 crx- retina TGACTGTATA (5) 1.9 0.0019 P10.5 crx+ retina CCTCCCAGTG (3) 5.8 0.0058 Adult retinal CCTCCCAGTG (3) 5.6 0.0056 Adult retinal TGGTCTTTGG (6) 3.7 0.0037 Adult retinal GACAGTTGGG (2) 1.9 0.0019 Adult retinal GATGTCCTCA (3) 1.9 0.0019 Adult retinal TGACTGTATA (5) 1.9 0.0019 ONL GATGTCCTCA (3) 3.8 0.0038 ONL TGACTGTATA (5) 1.9 0.0019