Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.29829	Rab5c	RAB5C, member RAS oncogene family	11	11 60.0 cM	19345
Gene Ontology	endocytic vesicle | endosome organization and biogenesis | GTP binding | GTPase activity | GTPase activity | protein transport | regulation of endocytosis | small GTPase mediated signal transduction
Human Homolog	RAB5C[RAB5C, member RAS oncogene family]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 63 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TAACCAATCA 19.6 0.0196 P8 Cb GC CCCCCAATTC (2) 11.4 0.0114 P8 Cb GC GTGAAGAAAA (5) 1.6 0.0016 Cb medulloblastoma CCCCCAATTC (2) 34.7 0.0347 Cb medulloblastoma TAACCAATCA 20.8 0.0208 Cb medulloblastoma GCAATAGCTA 2.3 0.0023 P8 GC+1d culture TAACCAATCA 24 0.024 P8 GC+1d culture CCCCCAATTC (2) 18.3 0.0183 P8 GC+1d culture GTAACCAAAA (4) 2.3 0.0023 P8 GC+1d culture GTGAAGAAAA (5) 2.3 0.0023 P8 GC+SHH+1d culture TAACCAATCA 26.9 0.0269 P8 GC+SHH+1d culture CCCCCAATTC (2) 11.7 0.0117 P8 GC+SHH+1d culture GTGAAGAAAA (5) 3.5 0.0035 P8 GC+SHH+1d culture AAGAGCAAGC (3) 2.3 0.0023 P8 GC+SHH+1d culture GTAACCAAAA (4) 2.3 0.0023 P8 GC+SHH+1d culture GCAATAGCTA 1.2 0.0012 3T3 fibroblasts GTAACCAAAA (4) 3.5 0.0035 E15 cortex CCCCCAATTC (2) 14.8 0.0148 E15 cortex TAACCAATCA 9.9 0.0099 P1 cortex CCCCCAATTC (2) 18.2 0.0182 P1 cortex TAACCAATCA 9.1 0.0091 Hypothalamus TAACCAATCA 21.7 0.0217 Hypothalamus CCCCCAATTC (2) 19.9 0.0199 Hypothalamus GTAACCAAAA (4) 5.4 0.0054 Hypothalamus GTGAAGAAAA (5) 3.6 0.0036 E12.5 retina TAACCAATCA 13.1 0.0131 E12.5 retina CCCCCAATTC (2) 5.6 0.0056 E12.5 retina GTAACCAAAA (4) 3.8 0.0038 E12.5 retina GCAATAGCTA 1.9 0.0019 E14.5 retina TAACCAATCA 27.3 0.0273 E14.5 retina CCCCCAATTC (2) 7.3 0.0073 E14.5 retina GTGAAGAAAA (5) 5.5 0.0055 E16.5 retina CCCCCAATTC (2) 18.1 0.0181 E16.5 retina TAACCAATCA 16.3 0.0163 E16.5 retina GTGAAGAAAA (5) 3.6 0.0036 E16.5 retina AAGAGCAAGC (3) 1.8 0.0018 E16.5 retina GTAACCAAAA (4) 1.8 0.0018 E18.5 retina TAACCAATCA 27.3 0.0273 E18.5 retina CCCCCAATTC (2) 14.6 0.0146 E18.5 retina GTGAAGAAAA (5) 1.8 0.0018 P0.5 retina TAACCAATCA 21.6 0.0216 P0.5 retina CCCCCAATTC (2) 9.8 0.0098 P0.5 retina GTAACCAAAA (4) 2 0.002 P2.5 retina TAACCAATCA 40.5 0.0405 P2.5 retina CCCCCAATTC (2) 21.1 0.0211 P2.5 retina GTAACCAAAA (4) 3.5 0.0035 P2.5 retina GTGAAGAAAA (5) 1.8 0.0018 P4.5 retina TAACCAATCA 29.7 0.0297 P4.5 retina CCCCCAATTC (2) 13.9 0.0139 P4.5 retina GTAACCAAAA (4) 2 0.002 P6.5 retina CCCCCAATTC (2) 65 0.065 P6.5 retina TAACCAATCA 35 0.035 P6.5 retina GTGAAGAAAA (5) 1.7 0.0017 P10.5 crx- retina CCCCCAATTC (2) 57.6 0.0576 P10.5 crx- retina TAACCAATCA 31.6 0.0316 P10.5 crx+ retina CCCCCAATTC (2) 61.5 0.0615 P10.5 crx+ retina TAACCAATCA 26.9 0.0269 P10.5 crx+ retina GTGAAGAAAA (5) 1.9 0.0019 Adult retinal CCCCCAATTC (2) 59.2 0.0592 Adult retinal TAACCAATCA 11.1 0.0111 ONL TAACCAATCA 17.2 0.0172 ONL CCCCCAATTC (2) 13.4 0.0134 ONL GTAACCAAAA (4) 3.8 0.0038