Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.299367	Hnrpa1	heterogeneous nuclear ribonucleoprotein A1	15	15 61.7 cM	15382
Gene Ontology	mRNA processing | mRNA-nucleus export | nucleus | ribonucleoprotein complex | RNA binding | RNA processing | transport
Human Homolog	HNRPA1[heterogeneous nuclear ribonucleoprotein A1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 139 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGTACTCAAT (3) 171.3 0.1713 P8 Cb GC ACGCTGAATA (2) 62 0.062 P8 Cb GC CAGTTGGGTT 21.2 0.0212 P8 Cb GC ATAATGGATA (3) 14.7 0.0147 P8 Cb GC GGTGAAAAAG (3) 3.3 0.0033 P8 Cb GC CTGTTGATTG (3) 1.6 0.0016 P8 Cb GC GCAGTGAGTG (5) 1.6 0.0016 P8 Cb GC GGGAAAAAAA (36) 1.6 0.0016 P8 Cb GC TGTGTGGGCA (4) 1.6 0.0016 Cb medulloblastoma GGGAAAAAAA (36) 92.5 0.0925 Cb medulloblastoma TGTACTCAAT (3) 20.8 0.0208 Cb medulloblastoma ACGCTGAATA (2) 2.3 0.0023 Cb medulloblastoma CAGTTGGGTT 2.3 0.0023 P8 GC+1d culture TGTACTCAAT (3) 109.6 0.1096 P8 GC+1d culture ACGCTGAATA (2) 29.7 0.0297 P8 GC+1d culture CAGTTGGGTT 19.4 0.0194 P8 GC+1d culture ATAATGGATA (3) 14.8 0.0148 P8 GC+1d culture ACTCTGTGGA (4) 1.1 0.0011 P8 GC+1d culture GGGAAAAAAA (36) 1.1 0.0011 P8 GC+1d culture TGTGTGGGCA (4) 1.1 0.0011 P8 GC+SHH+1d culture TGTACTCAAT (3) 147.5 0.1475 P8 GC+SHH+1d culture ACGCTGAATA (2) 50.3 0.0503 P8 GC+SHH+1d culture CAGTTGGGTT 11.7 0.0117 P8 GC+SHH+1d culture ATAATGGATA (3) 9.4 0.0094 P8 GC+SHH+1d culture AGGTCTGTGG (2) 2.3 0.0023 P8 GC+SHH+1d culture GGCGTGGTGG (8) 2.3 0.0023 P8 GC+SHH+1d culture ACTCTGTGGA (4) 1.2 0.0012 P8 GC+SHH+1d culture CTGTTGATTG (3) 1.2 0.0012 P8 GC+SHH+1d culture GCAGTGAGTG (5) 1.2 0.0012 P8 GC+SHH+1d culture GGGAAAAAAA (36) 1.2 0.0012 P8 GC+SHH+1d culture GGTGAAAAAG (3) 1.2 0.0012 P8 GC+SHH+1d culture TCTTCTTTGT (2) 1.2 0.0012 P8 GC+SHH+1d culture TGCACTCAAT 1.2 0.0012 3T3 fibroblasts ATAATGGATA (3) 14 0.014 3T3 fibroblasts TGTACTCAAT (3) 10.5 0.0105 3T3 fibroblasts ACGCTGAATA (2) 3.5 0.0035 3T3 fibroblasts CAGTTGGGTT 3.5 0.0035 3T3 fibroblasts GCAGTGAGTG (5) 3.5 0.0035 E15 cortex CAGTTGGGTT 29.7 0.0297 E15 cortex ACGCTGAATA (2) 19.8 0.0198 E15 cortex TGTACTCAAT (3) 14.8 0.0148 E15 cortex ATAATGGATA (3) 9.9 0.0099 E15 cortex GCAGTGAGTG (5) 4.9 0.0049 E15 cortex GGCGTGGTGG (8) 4.9 0.0049 P1 cortex TGTACTCAAT (3) 77.3 0.0773 P1 cortex CAGTTGGGTT 13.6 0.0136 P1 cortex ATAATGGATA (3) 4.5 0.0045 P1 cortex GGGAAAAAAA (36) 4.5 0.0045 Hypothalamus GGGAAAAAAA (36) 41.7 0.0417 Hypothalamus TGTACTCAAT (3) 19.9 0.0199 Hypothalamus ACGCTGAATA (2) 5.4 0.0054 Hypothalamus CAGTTGGGTT 5.4 0.0054 Hypothalamus AGGTCTGTGG (2) 1.8 0.0018 Hypothalamus ATAATGGATA (3) 1.8 0.0018 Hypothalamus GGTGAAAAAG (3) 1.8 0.0018 E12.5 retina TGTACTCAAT (3) 277.8 0.2778 E12.5 retina ACGCTGAATA (2) 92 0.092 E12.5 retina CAGTTGGGTT 33.8 0.0338 E12.5 retina ATAATGGATA (3) 13.1 0.0131 E12.5 retina CTGTTGATTG (3) 3.8 0.0038 E12.5 retina AGGTCTGTGG (2) 1.9 0.0019 E12.5 retina GGTGAAAAAG (3) 1.9 0.0019 E14.5 retina TGTACTCAAT (3) 171.3 0.1713 E14.5 retina CAGTTGGGTT 23.7 0.0237 E14.5 retina ATAATGGATA (3) 18.2 0.0182 E14.5 retina ACGCTGAATA (2) 3.6 0.0036 E14.5 retina GCAGTGAGTG (5) 3.6 0.0036 E14.5 retina GGGAAAAAAA (36) 1.8 0.0018 E14.5 retina TCTTCTTTGT (2) 1.8 0.0018 E16.5 retina TGTACTCAAT (3) 150.3 0.1503 E16.5 retina CAGTTGGGTT 23.5 0.0235 E16.5 retina ATAATGGATA (3) 7.2 0.0072 E16.5 retina ACGCTGAATA (2) 5.4 0.0054 E16.5 retina GCAGTGAGTG (5) 5.4 0.0054 E16.5 retina GGGAAAAAAA (36) 3.6 0.0036 E16.5 retina TGCACTCAAT 3.6 0.0036 E16.5 retina AGGTCTGTGG (2) 1.8 0.0018 E16.5 retina TCTTCTTTGT (2) 1.8 0.0018 E16.5 retina TGTGTGGGCA (4) 1.8 0.0018 E18.5 retina TGTACTCAAT (3) 196.4 0.1964 E18.5 retina ACGCTGAATA (2) 69.1 0.0691 E18.5 retina CAGTTGGGTT 32.7 0.0327 E18.5 retina ATAATGGATA (3) 9.1 0.0091 E18.5 retina CTGTTGATTG (3) 1.8 0.0018 E18.5 retina GCAGTGAGTG (5) 1.8 0.0018 E18.5 retina GGGAAAAAAA (36) 1.8 0.0018 E18.5 retina TGCACTCAAT 1.8 0.0018 P0.5 retina TGTACTCAAT (3) 68.7 0.0687 P0.5 retina CAGTTGGGTT 41.2 0.0412 P0.5 retina ACGCTGAATA (2) 17.7 0.0177 P0.5 retina ATAATGGATA (3) 9.8 0.0098 P0.5 retina GCAGTGAGTG (5) 3.9 0.0039 P0.5 retina GGGAAAAAAA (36) 3.9 0.0039 P0.5 retina ACTCTGTGGA (4) 2 0.002 P0.5 retina GGCGTGGTGG (8) 2 0.002 P2.5 retina TGTACTCAAT (3) 163.7 0.1637 P2.5 retina CAGTTGGGTT 33.4 0.0334 P2.5 retina ACGCTGAATA (2) 26.4 0.0264 P2.5 retina ATAATGGATA (3) 12.3 0.0123 P2.5 retina GGGAAAAAAA (36) 7 0.007 P2.5 retina GGCGTGGTGG (8) 3.5 0.0035 P2.5 retina AGGTCTGTGG (2) 1.8 0.0018 P4.5 retina TGTACTCAAT (3) 140.7 0.1407 P4.5 retina CAGTTGGGTT 49.5 0.0495 P4.5 retina ACGCTGAATA (2) 21.8 0.0218 P4.5 retina ATAATGGATA (3) 11.9 0.0119 P4.5 retina GGGAAAAAAA (36) 9.9 0.0099 P4.5 retina GCAGTGAGTG (5) 5.9 0.0059 P4.5 retina GGCGTGGTGG (8) 2 0.002 P6.5 retina TGTACTCAAT (3) 85 0.085 P6.5 retina CAGTTGGGTT 33.3 0.0333 P6.5 retina ACGCTGAATA (2) 21.7 0.0217 P6.5 retina GGGAAAAAAA (36) 20 0.02 P6.5 retina AGGTCTGTGG (2) 3.3 0.0033 P6.5 retina GGTGAAAAAG (3) 1.7 0.0017 P10.5 crx- retina TGTACTCAAT (3) 29.7 0.0297 P10.5 crx- retina CAGTTGGGTT 16.7 0.0167 P10.5 crx- retina GGGAAAAAAA (36) 11.1 0.0111 P10.5 crx- retina ACGCTGAATA (2) 3.7 0.0037 P10.5 crx- retina ATAATGGATA (3) 3.7 0.0037 P10.5 crx- retina TGTGTGGGCA (4) 3.7 0.0037 P10.5 crx+ retina TGTACTCAAT (3) 32.7 0.0327 P10.5 crx+ retina CAGTTGGGTT 23.1 0.0231 P10.5 crx+ retina GGGAAAAAAA (36) 23.1 0.0231 P10.5 crx+ retina ACGCTGAATA (2) 11.5 0.0115 P10.5 crx+ retina GCAGTGAGTG (5) 3.8 0.0038 Adult retinal GGGAAAAAAA (36) 35.2 0.0352 Adult retinal TGTACTCAAT (3) 14.8 0.0148 Adult retinal CAGTTGGGTT 13 0.013 Adult retinal GGCGTGGTGG (8) 3.7 0.0037 Adult retinal ACGCTGAATA (2) 1.9 0.0019 Adult retinal AGGTCTGTGG (2) 1.9 0.0019 ONL GGGAAAAAAA (36) 30.6 0.0306 ONL TGTACTCAAT (3) 30.6 0.0306 ONL ATAATGGATA (3) 11.5 0.0115 ONL CAGTTGGGTT 9.6 0.0096 ONL ACGCTGAATA (2) 3.8 0.0038 ONL ACTCTGTGGA (4) 1.9 0.0019 ONL GGCGTGGTGG (8) 1.9 0.0019