Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.299398	Hspd1	heat shock protein 1 (chaperonin)	1		15510
Gene Ontology	ATP binding | chaperone activity | mitochondrion | protein folding | response to heat | response to unfolded protein
Human Homolog	HSPD1[heat shock 60kDa protein 1 (chaperonin)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 218 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTCTGCTTGT (5) 14.7 0.0147 P8 Cb GC AAAAATGTTG (5) 13.1 0.0131 P8 Cb GC AGAGTTCAGA 9.8 0.0098 P8 Cb GC CCTACAGATA 4.9 0.0049 P8 Cb GC GACAATGAAA (2) 4.9 0.0049 P8 Cb GC GTGGCACACG (29) 4.9 0.0049 P8 Cb GC TGGTGAAAAA (2) 3.3 0.0033 P8 Cb GC GTGGAAAAAA (7) 1.6 0.0016 P8 Cb GC TGGTGACACA (2) 1.6 0.0016 Cb medulloblastoma AGAGTTCAGA 16.2 0.0162 Cb medulloblastoma GTCTGCTTGT (5) 9.2 0.0092 Cb medulloblastoma GGGGGGGGGG (112) 6.9 0.0069 Cb medulloblastoma TGGTGAAAAA (2) 6.9 0.0069 Cb medulloblastoma CCTACAGATA 4.6 0.0046 Cb medulloblastoma GGGGAAAAAA (28) 4.6 0.0046 Cb medulloblastoma CCACCCATTG 2.3 0.0023 Cb medulloblastoma GACAATGAAA (2) 2.3 0.0023 Cb medulloblastoma GACAATGACA (2) 2.3 0.0023 Cb medulloblastoma GGGGGAGGGG (18) 2.3 0.0023 Cb medulloblastoma GTGGCACACG (29) 2.3 0.0023 Cb medulloblastoma TCCCTGCTCT (8) 2.3 0.0023 Cb medulloblastoma TGACTTCTCT (6) 2.3 0.0023 Cb medulloblastoma TGGTGACACA (2) 2.3 0.0023 P8 GC+1d culture AGAGTTCAGA 10.3 0.0103 P8 GC+1d culture GTCTGCTTGT (5) 10.3 0.0103 P8 GC+1d culture GACAATGAAA (2) 6.8 0.0068 P8 GC+1d culture AAAAATGTTG (5) 5.7 0.0057 P8 GC+1d culture TGGTGAAAAA (2) 4.6 0.0046 P8 GC+1d culture CCTACAGATA 3.4 0.0034 P8 GC+1d culture GGGGGAGGGG (18) 2.3 0.0023 P8 GC+1d culture GGGGGGGGGG (112) 2.3 0.0023 P8 GC+1d culture GTGGAAAAAA (7) 2.3 0.0023 P8 GC+1d culture GACAATGACA (2) 1.1 0.0011 P8 GC+1d culture GAGAGGAGGA (6) 1.1 0.0011 P8 GC+1d culture GGGGAAAAAA (28) 1.1 0.0011 P8 GC+1d culture GTGGCACACG (29) 1.1 0.0011 P8 GC+1d culture TTTTAACTCC (2) 1.1 0.0011 P8 GC+SHH+1d culture GTCTGCTTGT (5) 12.9 0.0129 P8 GC+SHH+1d culture AAAAATGTTG (5) 11.7 0.0117 P8 GC+SHH+1d culture AGAGTTCAGA 9.4 0.0094 P8 GC+SHH+1d culture GACAATGAAA (2) 9.4 0.0094 P8 GC+SHH+1d culture GGGGGGGGGG (112) 7 0.007 P8 GC+SHH+1d culture GTGGCACACG (29) 7 0.007 P8 GC+SHH+1d culture TGGTGAAAAA (2) 5.9 0.0059 P8 GC+SHH+1d culture CCTACAGATA 4.7 0.0047 P8 GC+SHH+1d culture AGAGTTCAAA (6) 1.2 0.0012 P8 GC+SHH+1d culture CCAAAGATGT (4) 1.2 0.0012 P8 GC+SHH+1d culture CCACCCATTG 1.2 0.0012 P8 GC+SHH+1d culture TGGTGACACA (2) 1.2 0.0012 P8 GC+SHH+1d culture TTTTAACTCC (2) 1.2 0.0012 3T3 fibroblasts GTGGCACACG (29) 35 0.035 3T3 fibroblasts AGAGTTCAGA 14 0.014 3T3 fibroblasts GGGGGAGGGG (18) 3.5 0.0035 3T3 fibroblasts GGGGGGGGGG (112) 3.5 0.0035 3T3 fibroblasts GTCTGCTTGT (5) 3.5 0.0035 3T3 fibroblasts TCCCTGCTCT (8) 3.5 0.0035 E15 cortex GTGGCACACG (29) 69.3 0.0693 E15 cortex GAGAGGAGGA (6) 4.9 0.0049 E15 cortex GGGGAAAAAA (28) 4.9 0.0049 E15 cortex GGGGGGGGGG (112) 4.9 0.0049 E15 cortex TGGTGAAAAA (2) 4.9 0.0049 P1 cortex GTGGCACACG (29) 9.1 0.0091 P1 cortex AAAAATGTTG (5) 4.5 0.0045 P1 cortex GGGGGAGGGG (18) 4.5 0.0045 P1 cortex GTCTGCTTGT (5) 4.5 0.0045 P1 cortex GTGGAAAAAA (7) 4.5 0.0045 Hypothalamus TGGTGAAAAA (2) 10.9 0.0109 Hypothalamus AGAGTTCAGA 5.4 0.0054 Hypothalamus AAAAATGTTG (5) 3.6 0.0036 Hypothalamus GACAATGAAA (2) 3.6 0.0036 Hypothalamus GAGAGTTCCA (2) 3.6 0.0036 Hypothalamus GTGGAAAAAA (7) 3.6 0.0036 Hypothalamus CCTACAGATA 1.8 0.0018 Hypothalamus GGGGGGGGGG (112) 1.8 0.0018 Hypothalamus GTCTGCTTGT (5) 1.8 0.0018 Hypothalamus TTTTAACTCC (2) 1.8 0.0018 E12.5 retina AGAGTTCAGA 48.8 0.0488 E12.5 retina AAAAATGTTG (5) 13.1 0.0131 E12.5 retina GTGGCACACG (29) 13.1 0.0131 E12.5 retina GTCTGCTTGT (5) 11.3 0.0113 E12.5 retina GACAATGAAA (2) 9.4 0.0094 E12.5 retina CCTACAGATA 5.6 0.0056 E12.5 retina AGAGTTCAAA (6) 3.8 0.0038 E12.5 retina GGGGGAGGGG (18) 3.8 0.0038 E12.5 retina TGGTGACACA (2) 3.8 0.0038 E12.5 retina GACAATGACA (2) 1.9 0.0019 E12.5 retina GGGGAAAAAA (28) 1.9 0.0019 E12.5 retina TGGTGAAAAA (2) 1.9 0.0019 E14.5 retina AGAGTTCAGA 18.2 0.0182 E14.5 retina GTGGCACACG (29) 18.2 0.0182 E14.5 retina AAAAATGTTG (5) 10.9 0.0109 E14.5 retina TGGTGAAAAA (2) 9.1 0.0091 E14.5 retina GACAATGACA (2) 5.5 0.0055 E14.5 retina GTCTGCTTGT (5) 5.5 0.0055 E14.5 retina GACAATGAAA (2) 3.6 0.0036 E14.5 retina GTGGAAAAAA (7) 3.6 0.0036 E14.5 retina AGAGTTCAAA (6) 1.8 0.0018 E14.5 retina CCTACAGATA 1.8 0.0018 E14.5 retina GAGAGGAGGA (6) 1.8 0.0018 E14.5 retina TGGTGAAGGG (2) 1.8 0.0018 E14.5 retina TGGTGACACA (2) 1.8 0.0018 E16.5 retina AGAGTTCAGA 16.3 0.0163 E16.5 retina AAAAATGTTG (5) 9.1 0.0091 E16.5 retina TGGTGAAAAA (2) 7.2 0.0072 E16.5 retina GTGGCACACG (29) 5.4 0.0054 E16.5 retina AGAGTTCAAA (6) 3.6 0.0036 E16.5 retina CCTACAGATA 3.6 0.0036 E16.5 retina GTGGAAAAAA (7) 3.6 0.0036 E16.5 retina TTTTAACTCC (2) 3.6 0.0036 E16.5 retina GACAATGAAA (2) 1.8 0.0018 E16.5 retina GACAATGACA (2) 1.8 0.0018 E16.5 retina GGGGAAAAAA (28) 1.8 0.0018 E16.5 retina GTCTGCTTGT (5) 1.8 0.0018 E16.5 retina TCCCTGCTCT (8) 1.8 0.0018 E16.5 retina TGGTGAAGGG (2) 1.8 0.0018 E16.5 retina TGGTGACACA (2) 1.8 0.0018 E18.5 retina GTCTGCTTGT (5) 18.2 0.0182 E18.5 retina AAAAATGTTG (5) 12.7 0.0127 E18.5 retina AGAGTTCAGA 10.9 0.0109 E18.5 retina TGGTGAAAAA (2) 10.9 0.0109 E18.5 retina CCTACAGATA 7.3 0.0073 E18.5 retina AGAGTTCAAA (6) 5.5 0.0055 E18.5 retina GGGGAAAAAA (28) 3.6 0.0036 E18.5 retina GTGGCACACG (29) 3.6 0.0036 E18.5 retina TGGTGACACA (2) 3.6 0.0036 E18.5 retina CCAAAGATGT (4) 1.8 0.0018 E18.5 retina GACAATGACA (2) 1.8 0.0018 E18.5 retina GGGGGAGGGG (18) 1.8 0.0018 E18.5 retina GTGGAAAAAA (7) 1.8 0.0018 E18.5 retina TGACTTCTCT (6) 1.8 0.0018 P0.5 retina GTCTGCTTGT (5) 11.8 0.0118 P0.5 retina AGAGTTCAGA 7.9 0.0079 P0.5 retina GACAATGAAA (2) 5.9 0.0059 P0.5 retina GTGGCACACG (29) 5.9 0.0059 P0.5 retina AAAAATGTTG (5) 2 0.002 P0.5 retina AGCTTGAACA 2 0.002 P0.5 retina CCTACAGATA 2 0.002 P0.5 retina GTGGAAAAAA (7) 2 0.002 P0.5 retina TGGTGAAGGG (2) 2 0.002 P0.5 retina TTTTAACTCC (2) 2 0.002 P2.5 retina AAAAATGTTG (5) 14.1 0.0141 P2.5 retina GTCTGCTTGT (5) 10.6 0.0106 P2.5 retina AGAGTTCAGA 8.8 0.0088 P2.5 retina GTGGCACACG (29) 8.8 0.0088 P2.5 retina GGGGGGGGGG (112) 7 0.007 P2.5 retina AGAGTTCAAA (6) 3.5 0.0035 P2.5 retina GACAATGAAA (2) 3.5 0.0035 P2.5 retina CCTACAGATA 1.8 0.0018 P2.5 retina GGGGGAGGGG (18) 1.8 0.0018 P2.5 retina TCCCTGCTCT (8) 1.8 0.0018 P2.5 retina TGACTTCTCT (6) 1.8 0.0018 P2.5 retina TGGTGACACA (2) 1.8 0.0018 P4.5 retina GTGGCACACG (29) 13.9 0.0139 P4.5 retina AGAGTTCAAA (6) 11.9 0.0119 P4.5 retina GGGGGGGGGG (112) 9.9 0.0099 P4.5 retina GTCTGCTTGT (5) 9.9 0.0099 P4.5 retina AGAGTTCAGA 5.9 0.0059 P4.5 retina GTGGAAAAAA (7) 5.9 0.0059 P4.5 retina AAAAATGTTG (5) 2 0.002 P4.5 retina GACAATGAAA (2) 2 0.002 P4.5 retina TGGTGAAAAA (2) 2 0.002 P4.5 retina TTTTAACTCC (2) 2 0.002 P6.5 retina GTCTGCTTGT (5) 16.7 0.0167 P6.5 retina AAAAATGTTG (5) 8.3 0.0083 P6.5 retina GTGGAAAAAA (7) 8.3 0.0083 P6.5 retina AGAGTTCAGA 6.7 0.0067 P6.5 retina GTGGCACACG (29) 6.7 0.0067 P6.5 retina GACAATGAAA (2) 5 0.005 P6.5 retina TTTTAACTCC (2) 5 0.005 P6.5 retina GGGGGGGGGG (112) 3.3 0.0033 P6.5 retina TGGTGAAAAA (2) 3.3 0.0033 P6.5 retina AGAGTTCAAA (6) 1.7 0.0017 P6.5 retina CCTACAGATA 1.7 0.0017 P6.5 retina GGGGAAAAAA (28) 1.7 0.0017 P6.5 retina GGGGGAGGGG (18) 1.7 0.0017 P10.5 crx- retina AGAGTTCAGA 11.1 0.0111 P10.5 crx- retina GACAATGAAA (2) 9.3 0.0093 P10.5 crx- retina GTCTGCTTGT (5) 9.3 0.0093 P10.5 crx- retina CCTACAGATA 7.4 0.0074 P10.5 crx- retina AGCTTGAACA 3.7 0.0037 P10.5 crx- retina AGAGTTCAAA (6) 1.9 0.0019 P10.5 crx- retina GGGGGAGGGG (18) 1.9 0.0019 P10.5 crx- retina GTGGCACACG (29) 1.9 0.0019 P10.5 crx- retina TGGTGAAAAA (2) 1.9 0.0019 P10.5 crx- retina TTTTAACTCC (2) 1.9 0.0019 P10.5 crx+ retina GTCTGCTTGT (5) 23.1 0.0231 P10.5 crx+ retina GGGGGGGGGG (112) 9.6 0.0096 P10.5 crx+ retina GTGGCACACG (29) 9.6 0.0096 P10.5 crx+ retina AGAGTTCAGA 7.7 0.0077 P10.5 crx+ retina AGAGTTCAAA (6) 5.8 0.0058 P10.5 crx+ retina TGGTGACACA (2) 5.8 0.0058 P10.5 crx+ retina TTTTAACTCC (2) 5.8 0.0058 P10.5 crx+ retina TGGTGAAAAA (2) 3.8 0.0038 P10.5 crx+ retina CCTACAGATA 1.9 0.0019 P10.5 crx+ retina GACAATGAAA (2) 1.9 0.0019 P10.5 crx+ retina GGGGGAGGGG (18) 1.9 0.0019 P10.5 crx+ retina GTGGAAAAAA (7) 1.9 0.0019 Adult retinal GTGGCACACG (29) 13 0.013 Adult retinal GTCTGCTTGT (5) 9.3 0.0093 Adult retinal AGAGTTCAGA 7.4 0.0074 Adult retinal TTTTAACTCC (2) 5.6 0.0056 Adult retinal AGAGTTCAAA (6) 3.7 0.0037 Adult retinal GGGGGGGGGG (112) 3.7 0.0037 Adult retinal TGGTGAAAAA (2) 3.7 0.0037 Adult retinal AGCTTGAACA 1.9 0.0019 Adult retinal CCTACAGATA 1.9 0.0019 Adult retinal GACAATGAAA (2) 1.9 0.0019 Adult retinal GGGGGAGGGG (18) 1.9 0.0019 Adult retinal GTGGAAAAAA (7) 1.9 0.0019 ONL GTGGCACACG (29) 7.7 0.0077 ONL AGAGTTCAGA 3.8 0.0038 ONL CCTACAGATA 3.8 0.0038 ONL GTCTGCTTGT (5) 3.8 0.0038 ONL TTTTAACTCC (2) 3.8 0.0038 ONL GACAATGAAA (2) 1.9 0.0019 ONL GAGAGTTCCA (2) 1.9 0.0019 ONL GGGGGGGGGG (112) 1.9 0.0019 ONL TGGTGAAAAA (2) 1.9 0.0019