Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.299774	Jup	junction plakoglobin	11	11 60.0 cM	16480
Gene Ontology	cell adhesion | cell-cell adherens junction | cytoskeleton | cytosol | desmosome | intercellular junction | protein binding | structural molecule activity
Human Homolog	JUP[junction plakoglobin] | JUP[junction plakoglobin]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 66 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTTTAATCC (355) 52.2 0.0522 P8 Cb GC GATGAGGATG (8) 3.3 0.0033 P8 Cb GC GGTTTGGGGG (3) 3.3 0.0033 Cb medulloblastoma CCTTTAATCC (355) 41.6 0.0416 Cb medulloblastoma GGTTTGGGGG (3) 2.3 0.0023 P8 GC+1d culture CCTTTAATCC (355) 32 0.032 P8 GC+1d culture GGTTTGGGGG (3) 10.3 0.0103 P8 GC+1d culture CTGGCCTAGC 1.1 0.0011 P8 GC+1d culture TGCAGGAGGT 1.1 0.0011 P8 GC+SHH+1d culture CCTTTAATCC (355) 25.8 0.0258 P8 GC+SHH+1d culture GGTTTGGGGG (3) 4.7 0.0047 P8 GC+SHH+1d culture TGCAGGAGGT 2.3 0.0023 P8 GC+SHH+1d culture AGAGGGGCAG (5) 1.2 0.0012 3T3 fibroblasts CCTTTAATCC (355) 70.1 0.0701 3T3 fibroblasts AGAGGGGCAG (5) 7 0.007 3T3 fibroblasts GATGAGGATG (8) 3.5 0.0035 E15 cortex CCTTTAATCC (355) 54.4 0.0544 E15 cortex GATGAGGATG (8) 9.9 0.0099 E15 cortex TGCTGTCTCC (8) 9.9 0.0099 E15 cortex GCTGGCCTAG 4.9 0.0049 P1 cortex CCTTTAATCC (355) 154.5 0.1545 Hypothalamus CCTTTAATCC (355) 19.9 0.0199 Hypothalamus TGCTGTCTCC (8) 5.4 0.0054 Hypothalamus GATGAGGATG (8) 1.8 0.0018 E12.5 retina CCTTTAATCC (355) 75.1 0.0751 E12.5 retina AACACCAGTG (4) 3.8 0.0038 E14.5 retina CCTTTAATCC (355) 120.3 0.1203 E14.5 retina TGCAGGAGGT 3.6 0.0036 E14.5 retina GCCTTTTTAC (3) 1.8 0.0018 E14.5 retina GCTGGCCTAG 1.8 0.0018 E16.5 retina CCTTTAATCC (355) 68.8 0.0688 E16.5 retina GGTTTGGGGG (3) 7.2 0.0072 E18.5 retina CCTTTAATCC (355) 23.6 0.0236 E18.5 retina GCTGGCCTAG 1.8 0.0018 E18.5 retina GGTTTGGGGG (3) 1.8 0.0018 E18.5 retina TGCAGGAGGT 1.8 0.0018 E18.5 retina TGCTGTCTCC (8) 1.8 0.0018 P0.5 retina CCTTTAATCC (355) 72.6 0.0726 P0.5 retina GGGAAAAACA (4) 2 0.002 P0.5 retina GGTTTGGGGG (3) 2 0.002 P0.5 retina TGCTGTCTCC (8) 2 0.002 P2.5 retina CCTTTAATCC (355) 70.4 0.0704 P2.5 retina GGTTTGGGGG (3) 7 0.007 P2.5 retina TGCTGTCTCC (8) 5.3 0.0053 P2.5 retina GATGAGGATG (8) 3.5 0.0035 P2.5 retina GCCTTTTTAC (3) 1.8 0.0018 P4.5 retina CCTTTAATCC (355) 43.6 0.0436 P4.5 retina CTGGCCTAGC 2 0.002 P4.5 retina GGTTTGGGGG (3) 2 0.002 P6.5 retina CCTTTAATCC (355) 70 0.07 P6.5 retina GGTTTGGGGG (3) 5 0.005 P6.5 retina GATGAGGATG (8) 1.7 0.0017 P10.5 crx- retina CCTTTAATCC (355) 63.2 0.0632 P10.5 crx- retina CTGGCCTAGC 1.9 0.0019 P10.5 crx+ retina CCTTTAATCC (355) 38.4 0.0384 P10.5 crx+ retina GGTTTGGGGG (3) 5.8 0.0058 P10.5 crx+ retina AACACCAGTG (4) 1.9 0.0019 P10.5 crx+ retina GGGAAAAACA (4) 1.9 0.0019 P10.5 crx+ retina TGCTGTCTCC (8) 1.9 0.0019 Adult retinal CCTTTAATCC (355) 129.6 0.1296 Adult retinal GGTTTGGGGG (3) 3.7 0.0037 Adult retinal CTGGCCTAGC 1.9 0.0019 ONL CCTTTAATCC (355) 84.3 0.0843 ONL GCCTTTTTAC (3) 1.9 0.0019 ONL GCTGGCCTAG 1.9 0.0019 ONL GGGAAAAACA (4) 1.9 0.0019