Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.30041	Copa	coatomer protein complex subunit alpha	1	1 93.5 cM	12847
Gene Ontology	COPI vesicle coat | cytoplasm | extracellular space | microsome | pancreatic juice secretion | soluble fraction | structural molecule activity | viral capsid
Human Homolog	COPA[coatomer protein complex, subunit alpha]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 67 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTGAGGAACG (3) 4.9 0.0049 P8 Cb GC AAGAACTAGC (4) 1.6 0.0016 P8 Cb GC CACAACCCCT (2) 1.6 0.0016 Cb medulloblastoma AAGAACTAGC (4) 2.3 0.0023 Cb medulloblastoma GAATGTGATA 2.3 0.0023 P8 GC+1d culture TCCTCTCTCT (6) 6.8 0.0068 P8 GC+1d culture TCCTTTTTCT (4) 5.7 0.0057 P8 GC+1d culture AAGAACTAGC (4) 3.4 0.0034 P8 GC+1d culture GAATGTGATA 2.3 0.0023 P8 GC+1d culture TCTTTTTTTT (12) 1.1 0.0011 P8 GC+SHH+1d culture TCCTCTCTCT (6) 8.2 0.0082 P8 GC+SHH+1d culture TCCTTTTTCT (4) 3.5 0.0035 P8 GC+SHH+1d culture AAGAACTAGC (4) 1.2 0.0012 P8 GC+SHH+1d culture TGGAGAGTCT (2) 1.2 0.0012 P8 GC+SHH+1d culture TGTCTGGCTG (3) 1.2 0.0012 3T3 fibroblasts TCCTCTCTCT (6) 10.5 0.0105 E15 cortex TCCTCTCTCT (6) 9.9 0.0099 P1 cortex AAGAACTAGC (4) 4.5 0.0045 P1 cortex TCCTCTCTCT (6) 4.5 0.0045 Hypothalamus AAGAACTAGC (4) 1.8 0.0018 Hypothalamus TCCTTTTTCT (4) 1.8 0.0018 E12.5 retina AAGAACTAGC (4) 1.9 0.0019 E12.5 retina CACAACCCCT (2) 1.9 0.0019 E12.5 retina GTGAGGAACG (3) 1.9 0.0019 E12.5 retina TGGAGAGTCT (2) 1.9 0.0019 E14.5 retina TCCTTTTTCT (4) 3.6 0.0036 E14.5 retina TGGAGAGTCT (2) 1.8 0.0018 E14.5 retina TTCTCTCTCT (3) 1.8 0.0018 E16.5 retina GAATGTGATA 3.6 0.0036 E16.5 retina TGGAGAGTCT (2) 3.6 0.0036 E16.5 retina CACAACCCCT (2) 1.8 0.0018 E16.5 retina TCCTCTCTCT (6) 1.8 0.0018 E18.5 retina TCCTTTTTCT (4) 9.1 0.0091 E18.5 retina GAATGTGATA 3.6 0.0036 E18.5 retina AAGAACTAGC (4) 1.8 0.0018 P0.5 retina TCCTCTCTCT (6) 9.8 0.0098 P0.5 retina AAGAACTAGC (4) 2 0.002 P0.5 retina GAACAATGAA (4) 2 0.002 P2.5 retina TCCTCTCTCT (6) 5.3 0.0053 P2.5 retina AAGAACTAGC (4) 3.5 0.0035 P2.5 retina TCCTTTTTCT (4) 3.5 0.0035 P2.5 retina GAACAATGAA (4) 1.8 0.0018 P2.5 retina TGGAGAGTCT (2) 1.8 0.0018 P4.5 retina TCCTTTTTCT (4) 5.9 0.0059 P4.5 retina AAGAACTAGC (4) 4 0.004 P4.5 retina GAATGTGATA 4 0.004 P4.5 retina TCCTCTCTCT (6) 2 0.002 P6.5 retina AAGAACTAGC (4) 6.7 0.0067 P6.5 retina TCCTCTCTCT (6) 3.3 0.0033 P6.5 retina TGGAGAGTCT (2) 3.3 0.0033 P6.5 retina TGTCTGGCTG (3) 3.3 0.0033 P6.5 retina GAATGTGATA 1.7 0.0017 P6.5 retina GTGAGGAACG (3) 1.7 0.0017 P10.5 crx- retina AAGAACTAGC (4) 3.7 0.0037 P10.5 crx- retina TCTTTTTTTT (12) 3.7 0.0037 P10.5 crx- retina TCCTTTTTCT (4) 1.9 0.0019 P10.5 crx+ retina AAGAACTAGC (4) 3.8 0.0038 P10.5 crx+ retina GAATGTGATA 1.9 0.0019 P10.5 crx+ retina GTGAGGAACG (3) 1.9 0.0019 P10.5 crx+ retina TCCTTTTTCT (4) 1.9 0.0019 Adult retinal TCCTCTCTCT (6) 16.7 0.0167 Adult retinal GAATGTGATA 1.9 0.0019 Adult retinal TTCTCTCTCT (3) 1.9 0.0019 ONL TCCTCTCTCT (6) 5.7 0.0057 ONL GAATGTGATA 3.8 0.0038 ONL TCTTTTTTTT (12) 3.8 0.0038 ONL TTCTCTCTCT (3) 1.9 0.0019